CCH79_00010704 protein (Gambusia affinis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CCH79_00010704

Uncharacterized protein. (839 aa)

Predicted Functional Partners:

CCH79_00000419

0.772

CCH79_00013184

0.766

CCH79_00007701

0.718

CCH79_00009298

0.715

CCH79_00012904

0.678

CCH79_00009683

0.599

CCH79_00003790

0.583

YTHDC2

0.581

CCH79_00013832

0.544

CCH79_00002042

0.542

Your Current Organism:

Gambusia affinis

NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCH79_00000419	CCH79_00002042	ENSGAFP00000018725	ENSGAFP00000008791	Uncharacterized protein.	Uncharacterized protein.	0.944
CCH79_00000419	CCH79_00003790	ENSGAFP00000018725	ENSGAFP00000015535	Uncharacterized protein.	U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase; RNA N6-methyltransferase that methylates adenosine residues of a subset of RNAs and plays a key role in S-adenosyl-L-methionine homeostasis by regulating expression of MAT2A transcripts. Able to N6- methylate a subset of mRNAs and U6 small nuclear RNAs (U6 snRNAs). In contrast to the METTL3-METTL14 heterodimer, only able to methylate a limited number of RNAs: requires both a 5'UACAGAGAA-3' nonamer sequence and a specific RNA structure. In presence of S-adenosyl-L-methionine, binds the 3'-UTR region of MAT2A mRNA and specifical [...]	0.589
CCH79_00000419	CCH79_00007701	ENSGAFP00000018725	ENSGAFP00000011714	Uncharacterized protein.	VIR_N domain-containing protein.	0.996
CCH79_00000419	CCH79_00009298	ENSGAFP00000018725	ENSGAFP00000030455	Uncharacterized protein.	Uncharacterized protein; Belongs to the MT-A70-like family.	0.978
CCH79_00000419	CCH79_00010704	ENSGAFP00000018725	ENSGAFP00000002224	Uncharacterized protein.	Uncharacterized protein.	0.772
CCH79_00000419	CCH79_00012904	ENSGAFP00000018725	ENSGAFP00000005618	Uncharacterized protein.	Uncharacterized protein; Belongs to the MT-A70-like family.	0.990
CCH79_00000419	CCH79_00013184	ENSGAFP00000018725	ENSGAFP00000008054	Uncharacterized protein.	C3H1-type domain-containing protein.	0.996
CCH79_00000419	CCH79_00013832	ENSGAFP00000018725	ENSGAFP00000019387	Uncharacterized protein.	2OG-FeII_Oxy_2 domain-containing protein.	0.603
CCH79_00000419	YTHDC2	ENSGAFP00000018725	ENSGAFP00000012046	Uncharacterized protein.	Uncharacterized protein.	0.667
CCH79_00002042	CCH79_00000419	ENSGAFP00000008791	ENSGAFP00000018725	Uncharacterized protein.	Uncharacterized protein.	0.944
CCH79_00002042	CCH79_00003790	ENSGAFP00000008791	ENSGAFP00000015535	Uncharacterized protein.	U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase; RNA N6-methyltransferase that methylates adenosine residues of a subset of RNAs and plays a key role in S-adenosyl-L-methionine homeostasis by regulating expression of MAT2A transcripts. Able to N6- methylate a subset of mRNAs and U6 small nuclear RNAs (U6 snRNAs). In contrast to the METTL3-METTL14 heterodimer, only able to methylate a limited number of RNAs: requires both a 5'UACAGAGAA-3' nonamer sequence and a specific RNA structure. In presence of S-adenosyl-L-methionine, binds the 3'-UTR region of MAT2A mRNA and specifical [...]	0.422
CCH79_00002042	CCH79_00007701	ENSGAFP00000008791	ENSGAFP00000011714	Uncharacterized protein.	VIR_N domain-containing protein.	0.849
CCH79_00002042	CCH79_00009298	ENSGAFP00000008791	ENSGAFP00000030455	Uncharacterized protein.	Uncharacterized protein; Belongs to the MT-A70-like family.	0.623
CCH79_00002042	CCH79_00010704	ENSGAFP00000008791	ENSGAFP00000002224	Uncharacterized protein.	Uncharacterized protein.	0.542
CCH79_00002042	CCH79_00012904	ENSGAFP00000008791	ENSGAFP00000005618	Uncharacterized protein.	Uncharacterized protein; Belongs to the MT-A70-like family.	0.616
CCH79_00002042	YTHDC2	ENSGAFP00000008791	ENSGAFP00000012046	Uncharacterized protein.	Uncharacterized protein.	0.839
CCH79_00003790	CCH79_00000419	ENSGAFP00000015535	ENSGAFP00000018725	U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase; RNA N6-methyltransferase that methylates adenosine residues of a subset of RNAs and plays a key role in S-adenosyl-L-methionine homeostasis by regulating expression of MAT2A transcripts. Able to N6- methylate a subset of mRNAs and U6 small nuclear RNAs (U6 snRNAs). In contrast to the METTL3-METTL14 heterodimer, only able to methylate a limited number of RNAs: requires both a 5'UACAGAGAA-3' nonamer sequence and a specific RNA structure. In presence of S-adenosyl-L-methionine, binds the 3'-UTR region of MAT2A mRNA and specifical [...]	Uncharacterized protein.	0.589
CCH79_00003790	CCH79_00002042	ENSGAFP00000015535	ENSGAFP00000008791	U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase; RNA N6-methyltransferase that methylates adenosine residues of a subset of RNAs and plays a key role in S-adenosyl-L-methionine homeostasis by regulating expression of MAT2A transcripts. Able to N6- methylate a subset of mRNAs and U6 small nuclear RNAs (U6 snRNAs). In contrast to the METTL3-METTL14 heterodimer, only able to methylate a limited number of RNAs: requires both a 5'UACAGAGAA-3' nonamer sequence and a specific RNA structure. In presence of S-adenosyl-L-methionine, binds the 3'-UTR region of MAT2A mRNA and specifical [...]	Uncharacterized protein.	0.422
CCH79_00003790	CCH79_00007701	ENSGAFP00000015535	ENSGAFP00000011714	U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase; RNA N6-methyltransferase that methylates adenosine residues of a subset of RNAs and plays a key role in S-adenosyl-L-methionine homeostasis by regulating expression of MAT2A transcripts. Able to N6- methylate a subset of mRNAs and U6 small nuclear RNAs (U6 snRNAs). In contrast to the METTL3-METTL14 heterodimer, only able to methylate a limited number of RNAs: requires both a 5'UACAGAGAA-3' nonamer sequence and a specific RNA structure. In presence of S-adenosyl-L-methionine, binds the 3'-UTR region of MAT2A mRNA and specifical [...]	VIR_N domain-containing protein.	0.666
CCH79_00003790	CCH79_00009298	ENSGAFP00000015535	ENSGAFP00000030455	U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase; RNA N6-methyltransferase that methylates adenosine residues of a subset of RNAs and plays a key role in S-adenosyl-L-methionine homeostasis by regulating expression of MAT2A transcripts. Able to N6- methylate a subset of mRNAs and U6 small nuclear RNAs (U6 snRNAs). In contrast to the METTL3-METTL14 heterodimer, only able to methylate a limited number of RNAs: requires both a 5'UACAGAGAA-3' nonamer sequence and a specific RNA structure. In presence of S-adenosyl-L-methionine, binds the 3'-UTR region of MAT2A mRNA and specifical [...]	Uncharacterized protein; Belongs to the MT-A70-like family.	0.646