CCH79_00004328 protein (Gambusia affinis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CCH79_00004328

PALP domain-containing protein. (321 aa)

Predicted Functional Partners:

CCH79_00008066

0.951

ENSGAFP00000020634

0.948

SHMT2

0.948

ENSGAFP00000014151

0.941

CCH79_00005299

0.940

CCH79_00011078

0.940

ENSGAFP00000009814

0.936

CCH79_00003796

0.936

CCH79_00013694

0.933

CCH79_00013455

0.932

Your Current Organism:

Gambusia affinis

NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCH79_00003796	CCH79_00004328	ENSGAFP00000015696	ENSGAFP00000002297	Uncharacterized protein.	PALP domain-containing protein.	0.936
CCH79_00003796	CCH79_00005299	ENSGAFP00000015696	ENSGAFP00000016242	Uncharacterized protein.	Aminotran_5 domain-containing protein.	0.978
CCH79_00003796	CCH79_00008066	ENSGAFP00000015696	ENSGAFP00000016122	Uncharacterized protein.	Uncharacterized protein.	0.864
CCH79_00003796	CCH79_00011078	ENSGAFP00000015696	ENSGAFP00000025496	Uncharacterized protein.	Uncharacterized protein.	0.978
CCH79_00003796	CCH79_00013455	ENSGAFP00000015696	ENSGAFP00000027825	Uncharacterized protein.	Cystathionine beta-synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.	0.956
CCH79_00003796	CCH79_00013694	ENSGAFP00000015696	ENSGAFP00000015685	Uncharacterized protein.	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	0.979
CCH79_00003796	ENSGAFP00000009814	ENSGAFP00000015696	ENSGAFP00000009814	Uncharacterized protein.	Threonine aldolase 1.	0.914
CCH79_00003796	ENSGAFP00000014151	ENSGAFP00000015696	ENSGAFP00000014151	Uncharacterized protein.	annotation not available	0.864
CCH79_00003796	ENSGAFP00000020634	ENSGAFP00000015696	ENSGAFP00000020634	Uncharacterized protein.	Serine hydroxymethyltransferase 2 (mitochondrial).	0.959
CCH79_00003796	SHMT2	ENSGAFP00000015696	ENSGAFP00000028231	Uncharacterized protein.	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	0.979
CCH79_00004328	CCH79_00003796	ENSGAFP00000002297	ENSGAFP00000015696	PALP domain-containing protein.	Uncharacterized protein.	0.936
CCH79_00004328	CCH79_00005299	ENSGAFP00000002297	ENSGAFP00000016242	PALP domain-containing protein.	Aminotran_5 domain-containing protein.	0.940
CCH79_00004328	CCH79_00008066	ENSGAFP00000002297	ENSGAFP00000016122	PALP domain-containing protein.	Uncharacterized protein.	0.951
CCH79_00004328	CCH79_00011078	ENSGAFP00000002297	ENSGAFP00000025496	PALP domain-containing protein.	Uncharacterized protein.	0.940
CCH79_00004328	CCH79_00013455	ENSGAFP00000002297	ENSGAFP00000027825	PALP domain-containing protein.	Cystathionine beta-synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.	0.932
CCH79_00004328	CCH79_00013694	ENSGAFP00000002297	ENSGAFP00000015685	PALP domain-containing protein.	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	0.933
CCH79_00004328	ENSGAFP00000009814	ENSGAFP00000002297	ENSGAFP00000009814	PALP domain-containing protein.	Threonine aldolase 1.	0.936
CCH79_00004328	ENSGAFP00000014151	ENSGAFP00000002297	ENSGAFP00000014151	PALP domain-containing protein.	annotation not available	0.941
CCH79_00004328	ENSGAFP00000020634	ENSGAFP00000002297	ENSGAFP00000020634	PALP domain-containing protein.	Serine hydroxymethyltransferase 2 (mitochondrial).	0.948
CCH79_00004328	SHMT2	ENSGAFP00000002297	ENSGAFP00000028231	PALP domain-containing protein.	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	0.948