STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGAFP00000002505annotation not available (957 aa)    
Predicted Functional Partners:
CCH79_00019485
RNA helicase.
   
 
 0.858
CCH79_00005046
Uncharacterized protein.
   
  
 0.824
ENSGAFP00000002491
annotation not available
 
      0.740
CCH79_00001010
Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family.
   
  
 0.703
CCH79_00012128
Uncharacterized protein.
   
 
 0.571
CCH79_00006148
60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 34S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.
    
 
 0.567
CCH79_00001219
RNA helicase.
   
   0.557
CCH79_00019700
CBF domain-containing protein.
   
    0.551
CCH79_00016060
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
   0.514
CCH79_00010543
Uncharacterized protein.
   
   0.511
Your Current Organism:
Gambusia affinis
NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish
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