STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH79_00016550Telo_bind domain-containing protein. (518 aa)    
Predicted Functional Partners:
CCH79_00012881
TINF2_N domain-containing protein.
    
 0.982
CCH79_00020849
Uncharacterized protein.
    
 0.982
CCH79_00008516
Telomerase reverse transcriptase; Telomerase is a ribonucleoprotein enzyme essential for the replication of chromosome termini in most eukaryotes. It elongates telomeres. It is a reverse transcriptase that adds simple sequence repeats to chromosome ends by copying a template sequence within the RNA component of the enzyme.
    
 0.961
CCH79_00006147
HTH myb-type domain-containing protein.
    
 0.941
ENSGAFP00000018638
annotation not available
    
 0.939
CCH79_00012221
Uncharacterized protein.
    
 0.770
CCH79_00005529
H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.
     
 0.767
CCH79_00009145
Uncharacterized protein.
   
 0.757
ENSGAFP00000009956
NOP10 ribonucleoprotein homolog (yeast).
     
 0.753
ENSGAFP00000031850
Si:ch211-190p8.2.
    
  0.723
Your Current Organism:
Gambusia affinis
NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish
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