ENSGAFP00000002944 protein (Gambusia affinis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSGAFP00000002944

annotation not available (123 aa)

Predicted Functional Partners:

CCH79_00006015

0.931

ENSGAFP00000002915

0.922

ENSGAFP00000000591

0.854

ENSGAFP00000023656

0.854

ENSGAFP00000029241

0.854

CCH79_00006428

0.854

CCH79_00010661

0.845

CCH79_00002477

0.801

CCH79_00006100

0.797

ENSGAFP00000032225

0.790

Your Current Organism:

Gambusia affinis

NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCH79_00002477	CCH79_00006100	ENSGAFP00000009172	ENSGAFP00000022868	Uncharacterized protein; Belongs to the SKP1 family.	Uncharacterized protein.	0.997
CCH79_00002477	ENSGAFP00000002915	ENSGAFP00000009172	ENSGAFP00000002915	Uncharacterized protein; Belongs to the SKP1 family.	annotation not available	0.801
CCH79_00002477	ENSGAFP00000002944	ENSGAFP00000009172	ENSGAFP00000002944	Uncharacterized protein; Belongs to the SKP1 family.	annotation not available	0.801
CCH79_00006015	ENSGAFP00000002915	ENSGAFP00000011609	ENSGAFP00000002915	Uncharacterized protein.	annotation not available	0.977
CCH79_00006015	ENSGAFP00000002944	ENSGAFP00000011609	ENSGAFP00000002944	Uncharacterized protein.	annotation not available	0.931
CCH79_00006100	CCH79_00002477	ENSGAFP00000022868	ENSGAFP00000009172	Uncharacterized protein.	Uncharacterized protein; Belongs to the SKP1 family.	0.997
CCH79_00006100	ENSGAFP00000002915	ENSGAFP00000022868	ENSGAFP00000002915	Uncharacterized protein.	annotation not available	0.797
CCH79_00006100	ENSGAFP00000002944	ENSGAFP00000022868	ENSGAFP00000002944	Uncharacterized protein.	annotation not available	0.797
CCH79_00006428	ENSGAFP00000000591	ENSGAFP00000030676	ENSGAFP00000000591	Uncharacterized protein.	annotation not available	0.740
CCH79_00006428	ENSGAFP00000002915	ENSGAFP00000030676	ENSGAFP00000002915	Uncharacterized protein.	annotation not available	0.854
CCH79_00006428	ENSGAFP00000002944	ENSGAFP00000030676	ENSGAFP00000002944	Uncharacterized protein.	annotation not available	0.854
CCH79_00006428	ENSGAFP00000023656	ENSGAFP00000030676	ENSGAFP00000023656	Uncharacterized protein.	Membrane associated guanylate kinase, WW and PDZ domain containing 3b.	0.743
CCH79_00006428	ENSGAFP00000029241	ENSGAFP00000030676	ENSGAFP00000029241	Uncharacterized protein.	annotation not available	0.740
CCH79_00010661	ENSGAFP00000002915	ENSGAFP00000028631	ENSGAFP00000002915	ICAT domain-containing protein.	annotation not available	0.845
CCH79_00010661	ENSGAFP00000002944	ENSGAFP00000028631	ENSGAFP00000002944	ICAT domain-containing protein.	annotation not available	0.845
ENSGAFP00000000591	CCH79_00006428	ENSGAFP00000000591	ENSGAFP00000030676	annotation not available	Uncharacterized protein.	0.740
ENSGAFP00000000591	ENSGAFP00000002915	ENSGAFP00000000591	ENSGAFP00000002915	annotation not available	annotation not available	0.854
ENSGAFP00000000591	ENSGAFP00000002944	ENSGAFP00000000591	ENSGAFP00000002944	annotation not available	annotation not available	0.854
ENSGAFP00000000591	ENSGAFP00000023656	ENSGAFP00000000591	ENSGAFP00000023656	annotation not available	Membrane associated guanylate kinase, WW and PDZ domain containing 3b.	0.740
ENSGAFP00000000591	ENSGAFP00000029241	ENSGAFP00000000591	ENSGAFP00000029241	annotation not available	annotation not available	0.958