STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH79_00012243Uncharacterized protein. (418 aa)    
Predicted Functional Partners:
ENSGAFP00000006858
Nuclear receptor corepressor 2.
    
 0.706
CCH79_00002159
SANT domain-containing protein.
    
 0.706
ENSGAFP00000009781
Jun proto-oncogene, AP-1 transcription factor subunit.
    
 0.699
CCH79_00011299
BZIP domain-containing protein.
    
 0.699
CCH79_00003071
Med1 domain-containing protein.
    
  0.694
CCH79_00010196
HATPase_c domain-containing protein.
   
 0.628
SOX18
Uncharacterized protein.
   
 
 0.586
CCH79_00002518
Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
    
  0.569
CCH79_00009340
Uncharacterized protein.
    
  0.568
CCH79_00019653
Uncharacterized protein.
    
  0.559
Your Current Organism:
Gambusia affinis
NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish
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