ENSGAFP00000003196 protein (Gambusia affinis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSGAFP00000003196

annotation not available (250 aa)

Predicted Functional Partners:

ENSGAFP00000000030

0.801

CCH79_00016155

0.780

CCH79_00009691

0.748

CCH79_00010310

0.697

CCH79_00009772

0.534

CCH79_00020100

0.531

CCH79_00012097

0.485

CCH79_00005126

0.462

CCH79_00015203

0.440

RAB19

0.440

Your Current Organism:

Gambusia affinis

NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCH79_00005126	CCH79_00009691	ENSGAFP00000010083	ENSGAFP00000031122	Uncharacterized protein.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.774
CCH79_00005126	CCH79_00012097	ENSGAFP00000010083	ENSGAFP00000030148	Uncharacterized protein.	Uncharacterized protein.	0.508
CCH79_00005126	CCH79_00015203	ENSGAFP00000010083	ENSGAFP00000025764	Uncharacterized protein.	Uncharacterized protein; Belongs to the tetraspanin (TM4SF) family.	0.536
CCH79_00005126	CCH79_00016155	ENSGAFP00000010083	ENSGAFP00000032710	Uncharacterized protein.	Uncharacterized protein.	0.760
CCH79_00005126	ENSGAFP00000000030	ENSGAFP00000010083	ENSGAFP00000000030	Uncharacterized protein.	annotation not available	0.690
CCH79_00005126	ENSGAFP00000003196	ENSGAFP00000010083	ENSGAFP00000003196	Uncharacterized protein.	annotation not available	0.462
CCH79_00005126	RAB19	ENSGAFP00000010083	ENSGAFP00000032433	Uncharacterized protein.	Uncharacterized protein.	0.536
CCH79_00009691	CCH79_00005126	ENSGAFP00000031122	ENSGAFP00000010083	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	Uncharacterized protein.	0.774
CCH79_00009691	CCH79_00012097	ENSGAFP00000031122	ENSGAFP00000030148	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	Uncharacterized protein.	0.662
CCH79_00009691	CCH79_00015203	ENSGAFP00000031122	ENSGAFP00000025764	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	Uncharacterized protein; Belongs to the tetraspanin (TM4SF) family.	0.841
CCH79_00009691	CCH79_00016155	ENSGAFP00000031122	ENSGAFP00000032710	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	Uncharacterized protein.	0.992
CCH79_00009691	ENSGAFP00000000030	ENSGAFP00000031122	ENSGAFP00000000030	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	annotation not available	0.999
CCH79_00009691	ENSGAFP00000003196	ENSGAFP00000031122	ENSGAFP00000003196	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	annotation not available	0.748
CCH79_00009691	RAB19	ENSGAFP00000031122	ENSGAFP00000032433	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	Uncharacterized protein.	0.841
CCH79_00009772	ENSGAFP00000003196	ENSGAFP00000002693	ENSGAFP00000003196	Uncharacterized protein.	annotation not available	0.534
CCH79_00010310	ENSGAFP00000003196	ENSGAFP00000019254	ENSGAFP00000003196	Bms1-type G domain-containing protein.	annotation not available	0.697
CCH79_00012097	CCH79_00005126	ENSGAFP00000030148	ENSGAFP00000010083	Uncharacterized protein.	Uncharacterized protein.	0.508
CCH79_00012097	CCH79_00009691	ENSGAFP00000030148	ENSGAFP00000031122	Uncharacterized protein.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.662
CCH79_00012097	CCH79_00015203	ENSGAFP00000030148	ENSGAFP00000025764	Uncharacterized protein.	Uncharacterized protein; Belongs to the tetraspanin (TM4SF) family.	0.478
CCH79_00012097	CCH79_00016155	ENSGAFP00000030148	ENSGAFP00000032710	Uncharacterized protein.	Uncharacterized protein.	0.932