CCH79_00010499 protein (Gambusia affinis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CCH79_00010499

Uncharacterized protein. (422 aa)

Predicted Functional Partners:

CCH79_00009969

0.759

CCH79_00012961

0.702

CCH79_00000419

0.694

CCH79_00000343

0.693

CCH79_00002909

0.653

CCH79_00019041

0.643

CCH79_00013479

0.643

CCH79_00016272

0.628

CCH79_00006210

0.605

CCH79_00000373

0.598

Your Current Organism:

Gambusia affinis

NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCH79_00000343	CCH79_00009969	ENSGAFP00000014872	ENSGAFP00000022161	Uncharacterized protein.	Uncharacterized protein.	0.551
CCH79_00000343	CCH79_00010499	ENSGAFP00000014872	ENSGAFP00000003477	Uncharacterized protein.	Uncharacterized protein.	0.693
CCH79_00000343	CCH79_00013479	ENSGAFP00000014872	ENSGAFP00000019860	Uncharacterized protein.	Uncharacterized protein.	0.455
CCH79_00000343	CCH79_00016272	ENSGAFP00000014872	ENSGAFP00000001565	Uncharacterized protein.	DM domain-containing protein.	0.719
CCH79_00000343	CCH79_00019041	ENSGAFP00000014872	ENSGAFP00000007838	Uncharacterized protein.	HMG box domain-containing protein.	0.732
CCH79_00000373	CCH79_00010499	ENSGAFP00000016118	ENSGAFP00000003477	Uncharacterized protein.	Uncharacterized protein.	0.598
CCH79_00000419	CCH79_00010499	ENSGAFP00000018725	ENSGAFP00000003477	Uncharacterized protein.	Uncharacterized protein.	0.694
CCH79_00002909	CCH79_00010499	ENSGAFP00000017334	ENSGAFP00000003477	Uncharacterized protein.	Uncharacterized protein.	0.653
CCH79_00002909	CCH79_00012961	ENSGAFP00000017334	ENSGAFP00000008062	Uncharacterized protein.	Cellular tumor antigen p53; Acts as a tumor suppressor in many tumor types; induces growth arrest or apoptosis depending on the physiological circumstances and cell type. Involved in cell cycle regulation as a trans-activator that acts to negatively regulate cell division by controlling a set of genes required for this process. One of the activated genes is an inhibitor of cyclin-dependent kinases. Apoptosis induction seems to be mediated either by stimulation of BAX and FAS antigen expression, or by repression of Bcl-2 expression; Belongs to the p53 family.	0.920
CCH79_00006210	CCH79_00010499	ENSGAFP00000014400	ENSGAFP00000003477	LIM zinc-binding domain-containing protein.	Uncharacterized protein.	0.605
CCH79_00009969	CCH79_00000343	ENSGAFP00000022161	ENSGAFP00000014872	Uncharacterized protein.	Uncharacterized protein.	0.551
CCH79_00009969	CCH79_00010499	ENSGAFP00000022161	ENSGAFP00000003477	Uncharacterized protein.	Uncharacterized protein.	0.759
CCH79_00009969	CCH79_00016272	ENSGAFP00000022161	ENSGAFP00000001565	Uncharacterized protein.	DM domain-containing protein.	0.577
CCH79_00009969	CCH79_00019041	ENSGAFP00000022161	ENSGAFP00000007838	Uncharacterized protein.	HMG box domain-containing protein.	0.787
CCH79_00010499	CCH79_00000343	ENSGAFP00000003477	ENSGAFP00000014872	Uncharacterized protein.	Uncharacterized protein.	0.693
CCH79_00010499	CCH79_00000373	ENSGAFP00000003477	ENSGAFP00000016118	Uncharacterized protein.	Uncharacterized protein.	0.598
CCH79_00010499	CCH79_00000419	ENSGAFP00000003477	ENSGAFP00000018725	Uncharacterized protein.	Uncharacterized protein.	0.694
CCH79_00010499	CCH79_00002909	ENSGAFP00000003477	ENSGAFP00000017334	Uncharacterized protein.	Uncharacterized protein.	0.653
CCH79_00010499	CCH79_00006210	ENSGAFP00000003477	ENSGAFP00000014400	Uncharacterized protein.	LIM zinc-binding domain-containing protein.	0.605
CCH79_00010499	CCH79_00009969	ENSGAFP00000003477	ENSGAFP00000022161	Uncharacterized protein.	Uncharacterized protein.	0.759