CCH79_00017941 protein (Gambusia affinis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CCH79_00017941

Uncharacterized protein. (1488 aa)

Predicted Functional Partners:

ENSGAFP00000007617

0.767

CCH79_00007750

0.767

ENSGAFP00000003099

0.751

CCH79_00010583

0.741

ENSGAFP00000032225

0.737

CCH79_00014779

0.718

CCH79_00007682

0.680

H4C7

0.659

CCH79_00007041

0.658

ENSGAFP00000031850

0.657

Your Current Organism:

Gambusia affinis

NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCH79_00007041	CCH79_00014779	ENSGAFP00000002141	ENSGAFP00000026041	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Uncharacterized protein.	0.520
CCH79_00007041	CCH79_00017941	ENSGAFP00000002141	ENSGAFP00000003505	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Uncharacterized protein.	0.658
CCH79_00007041	ENSGAFP00000003099	ENSGAFP00000002141	ENSGAFP00000003099	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	annotation not available	0.998
CCH79_00007041	H4C7	ENSGAFP00000002141	ENSGAFP00000031360	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	H4 clustered histone 7.	0.454
CCH79_00007682	CCH79_00010583	ENSGAFP00000011258	ENSGAFP00000028227	YL1_C domain-containing protein.	Uncharacterized protein; Belongs to the actin family.	0.999
CCH79_00007682	CCH79_00017941	ENSGAFP00000011258	ENSGAFP00000003505	YL1_C domain-containing protein.	Uncharacterized protein.	0.680
CCH79_00007682	ENSGAFP00000031850	ENSGAFP00000011258	ENSGAFP00000031850	YL1_C domain-containing protein.	Si:ch211-190p8.2.	0.910
CCH79_00007682	ENSGAFP00000032225	ENSGAFP00000011258	ENSGAFP00000032225	YL1_C domain-containing protein.	RuvB-like AAA ATPase 1.	0.995
CCH79_00007750	CCH79_00017941	ENSGAFP00000016859	ENSGAFP00000003505	ARID domain-containing protein.	Uncharacterized protein.	0.767
CCH79_00007750	ENSGAFP00000007617	ENSGAFP00000016859	ENSGAFP00000007617	ARID domain-containing protein.	Translocase of outer mitochondrial membrane 20.	0.757
CCH79_00007750	ENSGAFP00000031850	ENSGAFP00000016859	ENSGAFP00000031850	ARID domain-containing protein.	Si:ch211-190p8.2.	0.876
CCH79_00007750	ENSGAFP00000032225	ENSGAFP00000016859	ENSGAFP00000032225	ARID domain-containing protein.	RuvB-like AAA ATPase 1.	0.763
CCH79_00007750	H4C7	ENSGAFP00000016859	ENSGAFP00000031360	ARID domain-containing protein.	H4 clustered histone 7.	0.980
CCH79_00010583	CCH79_00007682	ENSGAFP00000028227	ENSGAFP00000011258	Uncharacterized protein; Belongs to the actin family.	YL1_C domain-containing protein.	0.999
CCH79_00010583	CCH79_00017941	ENSGAFP00000028227	ENSGAFP00000003505	Uncharacterized protein; Belongs to the actin family.	Uncharacterized protein.	0.741
CCH79_00010583	ENSGAFP00000031850	ENSGAFP00000028227	ENSGAFP00000031850	Uncharacterized protein; Belongs to the actin family.	Si:ch211-190p8.2.	0.931
CCH79_00010583	ENSGAFP00000032225	ENSGAFP00000028227	ENSGAFP00000032225	Uncharacterized protein; Belongs to the actin family.	RuvB-like AAA ATPase 1.	0.999
CCH79_00010583	H4C7	ENSGAFP00000028227	ENSGAFP00000031360	Uncharacterized protein; Belongs to the actin family.	H4 clustered histone 7.	0.583
CCH79_00014779	CCH79_00007041	ENSGAFP00000026041	ENSGAFP00000002141	Uncharacterized protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.520
CCH79_00014779	CCH79_00017941	ENSGAFP00000026041	ENSGAFP00000003505	Uncharacterized protein.	Uncharacterized protein.	0.718