CCH79_00003655 protein (Gambusia affinis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CCH79_00003655

Uncharacterized protein. (362 aa)

Predicted Functional Partners:

CCH79_00003044

0.978

CCH79_00013159

0.935

CCH79_00002210

0.895

CCH79_00006736

0.739

CCH79_00015461

0.726

CCH79_00015006

0.584

CCH79_00012863

0.567

CCH79_00001055

0.561

ENSGAFP00000002229

0.551

CCH79_00008045

0.551

Your Current Organism:

Gambusia affinis

NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCH79_00001055	CCH79_00002210	ENSGAFP00000019244	ENSGAFP00000022958	Protein transport protein sec16; Plays a role in the organization of the endoplasmic reticulum exit sites (ERES), also known as transitional endoplasmic reticulum (tER). Required for secretory cargo traffic from the endoplasmic reticulum to the Golgi apparatus.	Uncharacterized protein.	0.561
CCH79_00001055	CCH79_00003655	ENSGAFP00000019244	ENSGAFP00000003531	Protein transport protein sec16; Plays a role in the organization of the endoplasmic reticulum exit sites (ERES), also known as transitional endoplasmic reticulum (tER). Required for secretory cargo traffic from the endoplasmic reticulum to the Golgi apparatus.	Uncharacterized protein.	0.561
CCH79_00002210	CCH79_00001055	ENSGAFP00000022958	ENSGAFP00000019244	Uncharacterized protein.	Protein transport protein sec16; Plays a role in the organization of the endoplasmic reticulum exit sites (ERES), also known as transitional endoplasmic reticulum (tER). Required for secretory cargo traffic from the endoplasmic reticulum to the Golgi apparatus.	0.561
CCH79_00002210	CCH79_00003044	ENSGAFP00000022958	ENSGAFP00000004670	Uncharacterized protein.	APG6 domain-containing protein.	0.952
CCH79_00002210	CCH79_00003655	ENSGAFP00000022958	ENSGAFP00000003531	Uncharacterized protein.	Uncharacterized protein.	0.895
CCH79_00002210	CCH79_00006736	ENSGAFP00000022958	ENSGAFP00000031356	Uncharacterized protein.	Uncharacterized protein.	0.739
CCH79_00002210	CCH79_00008045	ENSGAFP00000022958	ENSGAFP00000028300	Uncharacterized protein.	Uncharacterized protein.	0.551
CCH79_00002210	CCH79_00012863	ENSGAFP00000022958	ENSGAFP00000004172	Uncharacterized protein.	Phosphatidylinositol 3-kinase catalytic subunit type 3.	0.567
CCH79_00002210	CCH79_00013159	ENSGAFP00000022958	ENSGAFP00000006066	Uncharacterized protein.	Autophagy-related protein 13; Belongs to the ATG13 family. Metazoan subfamily.	0.926
CCH79_00002210	CCH79_00015006	ENSGAFP00000022958	ENSGAFP00000023280	Uncharacterized protein.	Dynamin-type G domain-containing protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.584
CCH79_00002210	CCH79_00015461	ENSGAFP00000022958	ENSGAFP00000032158	Uncharacterized protein.	Uncharacterized protein.	0.726
CCH79_00002210	ENSGAFP00000002229	ENSGAFP00000022958	ENSGAFP00000002229	Uncharacterized protein.	Microtubule-associated protein 1Sa.	0.551
CCH79_00003044	CCH79_00002210	ENSGAFP00000004670	ENSGAFP00000022958	APG6 domain-containing protein.	Uncharacterized protein.	0.952
CCH79_00003044	CCH79_00003655	ENSGAFP00000004670	ENSGAFP00000003531	APG6 domain-containing protein.	Uncharacterized protein.	0.978
CCH79_00003044	CCH79_00008045	ENSGAFP00000004670	ENSGAFP00000028300	APG6 domain-containing protein.	Uncharacterized protein.	0.481
CCH79_00003044	CCH79_00012863	ENSGAFP00000004670	ENSGAFP00000004172	APG6 domain-containing protein.	Phosphatidylinositol 3-kinase catalytic subunit type 3.	0.999
CCH79_00003044	CCH79_00013159	ENSGAFP00000004670	ENSGAFP00000006066	APG6 domain-containing protein.	Autophagy-related protein 13; Belongs to the ATG13 family. Metazoan subfamily.	0.917
CCH79_00003044	ENSGAFP00000002229	ENSGAFP00000004670	ENSGAFP00000002229	APG6 domain-containing protein.	Microtubule-associated protein 1Sa.	0.481
CCH79_00003655	CCH79_00001055	ENSGAFP00000003531	ENSGAFP00000019244	Uncharacterized protein.	Protein transport protein sec16; Plays a role in the organization of the endoplasmic reticulum exit sites (ERES), also known as transitional endoplasmic reticulum (tER). Required for secretory cargo traffic from the endoplasmic reticulum to the Golgi apparatus.	0.561
CCH79_00003655	CCH79_00002210	ENSGAFP00000003531	ENSGAFP00000022958	Uncharacterized protein.	Uncharacterized protein.	0.895