STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRRT1Uncharacterized protein. (232 aa)    
Predicted Functional Partners:
CCH79_00009024
Uncharacterized protein.
   
 0.614
ENSGAFP00000019928
methionyl-tRNA synthetase 1.
   
 0.609
CCH79_00018821
UBIQUITIN_CONJUGAT_2 domain-containing protein.
   
 0.603
CCH79_00005306
UBX domain-containing protein.
    
 0.595
CCH79_00019618
Uncharacterized protein.
    
  0.587
CCH79_00009427
Phospholipase A2.
    
 0.582
ENSGAFP00000023775
annotation not available
    
 0.563
CCH79_00012783
Tartrate-resistant acid phosphatase type 5.
   
 0.559
CCH79_00005153
MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.
    
  0.558
ENSGAFP00000031129
Si:ch211-106k21.5.
   
 0.556
Your Current Organism:
Gambusia affinis
NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.