CCH79_00014144 protein (Gambusia affinis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CCH79_00014144

Uncharacterized protein. (116 aa)

Predicted Functional Partners:

ENSGAFP00000006885

0.670

CCH79_00003300

0.652

ENSGAFP00000020435

0.650

CCH79_00014542

0.647

ENSGAFP00000027884

0.640

ENSGAFP00000027876

0.639

ENSGAFP00000027895

0.639

ENSGAFP00000027892

0.636

ENSGAFP00000027888

0.630

ENSGAFP00000015301

0.629

Your Current Organism:

Gambusia affinis

NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCH79_00003300	CCH79_00014144	ENSGAFP00000017844	ENSGAFP00000003678	Ig-like domain-containing protein.	Uncharacterized protein.	0.652
CCH79_00014144	CCH79_00003300	ENSGAFP00000003678	ENSGAFP00000017844	Uncharacterized protein.	Ig-like domain-containing protein.	0.652
CCH79_00014144	CCH79_00014542	ENSGAFP00000003678	ENSGAFP00000027847	Uncharacterized protein.	Ig-like domain-containing protein.	0.647
CCH79_00014144	ENSGAFP00000006885	ENSGAFP00000003678	ENSGAFP00000006885	Uncharacterized protein.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.670
CCH79_00014144	ENSGAFP00000015301	ENSGAFP00000003678	ENSGAFP00000015301	Uncharacterized protein.	annotation not available	0.629
CCH79_00014144	ENSGAFP00000020435	ENSGAFP00000003678	ENSGAFP00000020435	Uncharacterized protein.	annotation not available	0.650
CCH79_00014144	ENSGAFP00000027876	ENSGAFP00000003678	ENSGAFP00000027876	Uncharacterized protein.	annotation not available	0.639
CCH79_00014144	ENSGAFP00000027884	ENSGAFP00000003678	ENSGAFP00000027884	Uncharacterized protein.	annotation not available	0.640
CCH79_00014144	ENSGAFP00000027888	ENSGAFP00000003678	ENSGAFP00000027888	Uncharacterized protein.	annotation not available	0.630
CCH79_00014144	ENSGAFP00000027892	ENSGAFP00000003678	ENSGAFP00000027892	Uncharacterized protein.	annotation not available	0.636
CCH79_00014144	ENSGAFP00000027895	ENSGAFP00000003678	ENSGAFP00000027895	Uncharacterized protein.	annotation not available	0.639
CCH79_00014542	CCH79_00014144	ENSGAFP00000027847	ENSGAFP00000003678	Ig-like domain-containing protein.	Uncharacterized protein.	0.647
ENSGAFP00000006885	CCH79_00014144	ENSGAFP00000006885	ENSGAFP00000003678	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Uncharacterized protein.	0.670
ENSGAFP00000006885	ENSGAFP00000020435	ENSGAFP00000006885	ENSGAFP00000020435	Ubiquitin A-52 residue ribosomal protein fusion product 1.	annotation not available	0.998
ENSGAFP00000015301	CCH79_00014144	ENSGAFP00000015301	ENSGAFP00000003678	annotation not available	Uncharacterized protein.	0.629
ENSGAFP00000015301	ENSGAFP00000027876	ENSGAFP00000015301	ENSGAFP00000027876	annotation not available	annotation not available	0.410
ENSGAFP00000015301	ENSGAFP00000027884	ENSGAFP00000015301	ENSGAFP00000027884	annotation not available	annotation not available	0.459
ENSGAFP00000015301	ENSGAFP00000027888	ENSGAFP00000015301	ENSGAFP00000027888	annotation not available	annotation not available	0.410
ENSGAFP00000015301	ENSGAFP00000027895	ENSGAFP00000015301	ENSGAFP00000027895	annotation not available	annotation not available	0.459
ENSGAFP00000020435	CCH79_00014144	ENSGAFP00000020435	ENSGAFP00000003678	annotation not available	Uncharacterized protein.	0.650