CCH79_00004089 protein (Gambusia affinis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CCH79_00004089

ZIP4_domain domain-containing protein. (149 aa)

Predicted Functional Partners:

CCH79_00004895

0.772

CCH79_00017703

0.716

SLC39A11

0.712

CCH79_00009559

0.653

CCH79_00011830

0.649

CCH79_00004091

0.639

CCH79_00020242

0.632

CCH79_00004888

0.622

CCH79_00005736

0.600

CCH79_00003871

0.588

Your Current Organism:

Gambusia affinis

NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCH79_00003871	CCH79_00004089	ENSGAFP00000017896	ENSGAFP00000003753	Uncharacterized protein.	ZIP4_domain domain-containing protein.	0.588
CCH79_00003871	CCH79_00004888	ENSGAFP00000017896	ENSGAFP00000007433	Uncharacterized protein.	Uncharacterized protein.	0.735
CCH79_00003871	CCH79_00004895	ENSGAFP00000017896	ENSGAFP00000007551	Uncharacterized protein.	Uncharacterized protein.	0.518
CCH79_00003871	CCH79_00005736	ENSGAFP00000017896	ENSGAFP00000004035	Uncharacterized protein.	Uncharacterized protein.	0.746
CCH79_00003871	CCH79_00017703	ENSGAFP00000017896	ENSGAFP00000021739	Uncharacterized protein.	Uncharacterized protein.	0.734
CCH79_00003871	SLC39A11	ENSGAFP00000017896	ENSGAFP00000002775	Uncharacterized protein.	Solute carrier family 39 member 11.	0.647
CCH79_00004089	CCH79_00003871	ENSGAFP00000003753	ENSGAFP00000017896	ZIP4_domain domain-containing protein.	Uncharacterized protein.	0.588
CCH79_00004089	CCH79_00004091	ENSGAFP00000003753	ENSGAFP00000004025	ZIP4_domain domain-containing protein.	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.639
CCH79_00004089	CCH79_00004888	ENSGAFP00000003753	ENSGAFP00000007433	ZIP4_domain domain-containing protein.	Uncharacterized protein.	0.622
CCH79_00004089	CCH79_00004895	ENSGAFP00000003753	ENSGAFP00000007551	ZIP4_domain domain-containing protein.	Uncharacterized protein.	0.772
CCH79_00004089	CCH79_00005736	ENSGAFP00000003753	ENSGAFP00000004035	ZIP4_domain domain-containing protein.	Uncharacterized protein.	0.600
CCH79_00004089	CCH79_00009559	ENSGAFP00000003753	ENSGAFP00000017383	ZIP4_domain domain-containing protein.	Uncharacterized protein.	0.653
CCH79_00004089	CCH79_00011830	ENSGAFP00000003753	ENSGAFP00000010360	ZIP4_domain domain-containing protein.	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.	0.649
CCH79_00004089	CCH79_00017703	ENSGAFP00000003753	ENSGAFP00000021739	ZIP4_domain domain-containing protein.	Uncharacterized protein.	0.716
CCH79_00004089	CCH79_00020242	ENSGAFP00000003753	ENSGAFP00000006500	ZIP4_domain domain-containing protein.	Uncharacterized protein.	0.632
CCH79_00004089	SLC39A11	ENSGAFP00000003753	ENSGAFP00000002775	ZIP4_domain domain-containing protein.	Solute carrier family 39 member 11.	0.712
CCH79_00004091	CCH79_00004089	ENSGAFP00000004025	ENSGAFP00000003753	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	ZIP4_domain domain-containing protein.	0.639
CCH79_00004888	CCH79_00003871	ENSGAFP00000007433	ENSGAFP00000017896	Uncharacterized protein.	Uncharacterized protein.	0.735
CCH79_00004888	CCH79_00004089	ENSGAFP00000007433	ENSGAFP00000003753	Uncharacterized protein.	ZIP4_domain domain-containing protein.	0.622
CCH79_00004888	CCH79_00004895	ENSGAFP00000007433	ENSGAFP00000007551	Uncharacterized protein.	Uncharacterized protein.	0.744