CCH79_00004843 protein (Gambusia affinis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CCH79_00004843

CUT domain-containing protein. (290 aa)

Predicted Functional Partners:

CCH79_00004640

0.673

CCH79_00015144

0.638

ENSGAFP00000001020

0.601

CCH79_00015363

0.512

ENSGAFP00000022473

0.487

CCH79_00019103

0.485

ENSGAFP00000001506

0.481

CCH79_00015369

0.481

CCH79_00015370

0.481

CCH79_00007293

0.481

Your Current Organism:

Gambusia affinis

NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCH79_00004640	CCH79_00004843	ENSGAFP00000026748	ENSGAFP00000003862	Fork-head domain-containing protein.	CUT domain-containing protein.	0.673
CCH79_00004843	CCH79_00004640	ENSGAFP00000003862	ENSGAFP00000026748	CUT domain-containing protein.	Fork-head domain-containing protein.	0.673
CCH79_00004843	CCH79_00007293	ENSGAFP00000003862	ENSGAFP00000003780	CUT domain-containing protein.	HMG box domain-containing protein.	0.481
CCH79_00004843	CCH79_00015144	ENSGAFP00000003862	ENSGAFP00000011429	CUT domain-containing protein.	ORC_WH_C domain-containing protein.	0.638
CCH79_00004843	CCH79_00015363	ENSGAFP00000003862	ENSGAFP00000001330	CUT domain-containing protein.	AP-4 complex subunit epsilon; AP-4 forms a non clathrin-associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system; Belongs to the adaptor complexes large subunit family.	0.512
CCH79_00004843	CCH79_00015369	ENSGAFP00000003862	ENSGAFP00000001543	CUT domain-containing protein.	TRASH domain-containing protein.	0.481
CCH79_00004843	CCH79_00015370	ENSGAFP00000003862	ENSGAFP00000001557	CUT domain-containing protein.	Uncharacterized protein.	0.481
CCH79_00004843	CCH79_00019103	ENSGAFP00000003862	ENSGAFP00000007115	CUT domain-containing protein.	Uncharacterized protein.	0.485
CCH79_00004843	ENSGAFP00000001020	ENSGAFP00000003862	ENSGAFP00000001020	CUT domain-containing protein.	annotation not available	0.601
CCH79_00004843	ENSGAFP00000001506	ENSGAFP00000003862	ENSGAFP00000001506	CUT domain-containing protein.	annotation not available	0.481
CCH79_00004843	ENSGAFP00000022473	ENSGAFP00000003862	ENSGAFP00000022473	CUT domain-containing protein.	Recombination signal binding protein for immunoglobulin kappa J region-like.	0.487
CCH79_00007293	CCH79_00004843	ENSGAFP00000003780	ENSGAFP00000003862	HMG box domain-containing protein.	CUT domain-containing protein.	0.481
CCH79_00007293	CCH79_00015363	ENSGAFP00000003780	ENSGAFP00000001330	HMG box domain-containing protein.	AP-4 complex subunit epsilon; AP-4 forms a non clathrin-associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system; Belongs to the adaptor complexes large subunit family.	0.517
CCH79_00007293	CCH79_00015369	ENSGAFP00000003780	ENSGAFP00000001543	HMG box domain-containing protein.	TRASH domain-containing protein.	0.519
CCH79_00007293	CCH79_00015370	ENSGAFP00000003780	ENSGAFP00000001557	HMG box domain-containing protein.	Uncharacterized protein.	0.556
CCH79_00007293	CCH79_00019103	ENSGAFP00000003780	ENSGAFP00000007115	HMG box domain-containing protein.	Uncharacterized protein.	0.546
CCH79_00007293	ENSGAFP00000001506	ENSGAFP00000003780	ENSGAFP00000001506	HMG box domain-containing protein.	annotation not available	0.508
CCH79_00015144	CCH79_00004843	ENSGAFP00000011429	ENSGAFP00000003862	ORC_WH_C domain-containing protein.	CUT domain-containing protein.	0.638
CCH79_00015363	CCH79_00004843	ENSGAFP00000001330	ENSGAFP00000003862	AP-4 complex subunit epsilon; AP-4 forms a non clathrin-associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system; Belongs to the adaptor complexes large subunit family.	CUT domain-containing protein.	0.512
CCH79_00015363	CCH79_00007293	ENSGAFP00000001330	ENSGAFP00000003780	AP-4 complex subunit epsilon; AP-4 forms a non clathrin-associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system; Belongs to the adaptor complexes large subunit family.	HMG box domain-containing protein.	0.517