STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TIPARPUncharacterized protein. (701 aa)    
Predicted Functional Partners:
CCH79_00002083
Uncharacterized protein.
  
 0.537
HDAC2
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
  0.513
CCH79_00015877
Hist_deacetyl domain-containing protein.
   
  0.513
HDAC3
Histone deacetylase 3.
   
  0.513
CCH79_00008564
Hist_deacetyl domain-containing protein.
   
  0.513
HDAC1
Hist_deacetyl domain-containing protein.
   
  0.513
ENSGAFP00000011326
Histone deacetylase 11.
   
  0.501
CCH79_00012144
Uncharacterized protein.
   
  0.501
CCH79_00014375
Uncharacterized protein.
  
 0.456
CCH79_00002372
Rieske domain-containing protein.
  
 0.455
Your Current Organism:
Gambusia affinis
NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish
Server load: medium (72%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.