STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH79_00004091Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (466 aa)    
Predicted Functional Partners:
CCH79_00009462
Uncharacterized protein.
   
 
 0.992
CCH79_00010670
Uncharacterized protein.
   
 
 0.991
CCH79_00009777
OBG-type G domain-containing protein.
   
 
 0.991
CCH79_00006148
60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 34S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.
  
 
 0.991
CCH79_00020797
RRM domain-containing protein.
   
 
 0.991
ENSGAFP00000018588
MRT4 homolog, ribosome maturation factor.
  
 
 0.991
CCH79_00015369
TRASH domain-containing protein.
   
 
 0.990
CCH79_00020780
RNA helicase.
  
 
 0.990
ENSGAFP00000002281
NOC3-like DNA replication regulator.
   
 
 0.988
CCH79_00015673
Uncharacterized protein.
   
 
 0.988
Your Current Organism:
Gambusia affinis
NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish
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