STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH79_00002750Uncharacterized protein. (403 aa)    
Predicted Functional Partners:
CCH79_00003631
Small nuclear ribonucleoprotein Sm D2.
   
 
 0.833
CCH79_00017202
Uncharacterized protein.
   
    0.827
CCH79_00000772
Small nuclear ribonucleoprotein Sm D3.
   
   0.816
CCH79_00001862
Uncharacterized protein.
   
  
 0.812
CCH79_00013418
Nop domain-containing protein.
   
   0.810
CCH79_00011350
TROVE domain-containing protein.
    
 
 0.799
CCH79_00020007
Uncharacterized protein.
   
  
 0.774
CCH79_00014360
J domain-containing protein.
   
    0.765
CCH79_00014921
Sm domain-containing protein.
   
   0.736
ENSGAFP00000015016
Serine and arginine rich splicing factor 3a.
   
  
 0.729
Your Current Organism:
Gambusia affinis
NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.