STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH79_00017949RBR-type E3 ubiquitin transferase. (511 aa)    
Predicted Functional Partners:
CUL5
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 
 0.942
ENSGAFP00000022652
annotation not available
    
 
 0.942
CCH79_00003696
RING-type domain-containing protein.
    
 
 0.937
ENSGAFP00000022428
NEDD8 ubiquitin like modifier, like.
   
 0.921
CCH79_00004060
Uncharacterized protein.
    
 0.824
ENSGAFP00000021072
Ribosomal protein S27a.
   
 0.822
ENSGAFP00000006885
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.799
CCH79_00018821
UBIQUITIN_CONJUGAT_2 domain-containing protein.
    
 0.788
CCH79_00019345
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.764
ENSGAFP00000009798
annotation not available
   
 0.764
Your Current Organism:
Gambusia affinis
NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.