STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH79_00003036Lactamase_B domain-containing protein. (901 aa)    
Predicted Functional Partners:
CCH79_00008580
CPSF_A domain-containing protein.
   
 0.919
CCH79_00002867
Ku domain-containing protein.
    
 0.910
CCH79_00013799
DUF3453 domain-containing protein.
   
 0.908
CCH79_00016376
Uncharacterized protein.
   
 0.905
CCH79_00012411
Fip1 domain-containing protein.
    
 0.886
CCH79_00001405
Uncharacterized protein.
    
 0.885
CCH79_00006147
HTH myb-type domain-containing protein.
    
 
 0.880
ENSGAFP00000003099
annotation not available
  
 0.879
CCH79_00018838
DNA ligase.
  
 0.873
CCH79_00011859
CID domain-containing protein.
   
 0.869
Your Current Organism:
Gambusia affinis
NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish
Server load: medium (52%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.