ENSGAFP00000004095 protein (Gambusia affinis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSGAFP00000004095

annotation not available (113 aa)

Predicted Functional Partners:

CCH79_00005091

0.873

ENSGAFP00000007177

0.855

CCH79_00006118

0.855

ENSGAFP00000012493

0.855

CCH79_00016638

0.843

CCH79_00018314

0.837

ENSGAFP00000006362

0.822

CCH79_00017211

0.799

ENSGAFP00000005931

0.799

ENSGAFP00000005965

0.799

Your Current Organism:

Gambusia affinis

NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCH79_00005091	CCH79_00016638	ENSGAFP00000021572	ENSGAFP00000013528	Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	Uncharacterized protein.	0.999
CCH79_00005091	CCH79_00018314	ENSGAFP00000021572	ENSGAFP00000002646	Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	SEC7 domain-containing protein.	0.875
CCH79_00005091	ENSGAFP00000004095	ENSGAFP00000021572	ENSGAFP00000004095	Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	annotation not available	0.873
CCH79_00005091	ENSGAFP00000006362	ENSGAFP00000021572	ENSGAFP00000006362	Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	ADP-ribosylation factor GTPase activating protein 1.	0.811
CCH79_00006118	CCH79_00017211	ENSGAFP00000012470	ENSGAFP00000005914	Uncharacterized protein.	Uncharacterized protein.	0.987
CCH79_00006118	ENSGAFP00000004095	ENSGAFP00000012470	ENSGAFP00000004095	Uncharacterized protein.	annotation not available	0.855
CCH79_00006118	ENSGAFP00000005931	ENSGAFP00000012470	ENSGAFP00000005931	Uncharacterized protein.	annotation not available	0.986
CCH79_00006118	ENSGAFP00000005965	ENSGAFP00000012470	ENSGAFP00000005965	Uncharacterized protein.	annotation not available	0.997
CCH79_00006118	ENSGAFP00000007177	ENSGAFP00000012470	ENSGAFP00000007177	Uncharacterized protein.	Intersectin 2a.	0.988
CCH79_00006118	ENSGAFP00000012493	ENSGAFP00000012470	ENSGAFP00000012493	Uncharacterized protein.	Intersectin 2b.	0.998
CCH79_00016638	CCH79_00005091	ENSGAFP00000013528	ENSGAFP00000021572	Uncharacterized protein.	Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	0.999
CCH79_00016638	CCH79_00018314	ENSGAFP00000013528	ENSGAFP00000002646	Uncharacterized protein.	SEC7 domain-containing protein.	0.957
CCH79_00016638	ENSGAFP00000004095	ENSGAFP00000013528	ENSGAFP00000004095	Uncharacterized protein.	annotation not available	0.843
CCH79_00016638	ENSGAFP00000006362	ENSGAFP00000013528	ENSGAFP00000006362	Uncharacterized protein.	ADP-ribosylation factor GTPase activating protein 1.	0.852
CCH79_00017211	CCH79_00006118	ENSGAFP00000005914	ENSGAFP00000012470	Uncharacterized protein.	Uncharacterized protein.	0.987
CCH79_00017211	ENSGAFP00000004095	ENSGAFP00000005914	ENSGAFP00000004095	Uncharacterized protein.	annotation not available	0.799
CCH79_00017211	ENSGAFP00000005931	ENSGAFP00000005914	ENSGAFP00000005931	Uncharacterized protein.	annotation not available	0.646
CCH79_00017211	ENSGAFP00000005965	ENSGAFP00000005914	ENSGAFP00000005965	Uncharacterized protein.	annotation not available	0.941
CCH79_00017211	ENSGAFP00000007177	ENSGAFP00000005914	ENSGAFP00000007177	Uncharacterized protein.	Intersectin 2a.	0.987
CCH79_00017211	ENSGAFP00000012493	ENSGAFP00000005914	ENSGAFP00000012493	Uncharacterized protein.	Intersectin 2b.	0.998