STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH79_00019449Rhomboid domain-containing protein. (730 aa)    
Predicted Functional Partners:
CCH79_00020765
Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.
   
 
 0.626
CCH79_00008188
ANK_REP_REGION domain-containing protein.
     
 0.591
CCH79_00008193
Uncharacterized protein.
      
 0.587
CCH79_00004378
Uncharacterized protein.
    
 0.573
ENSGAFP00000028793
annotation not available
    
 0.573
CCH79_00018498
Uncharacterized protein.
    
 0.573
CCH79_00020936
Uncharacterized protein.
      
 0.571
CCH79_00004502
GLOBIN domain-containing protein; Belongs to the globin family.
   
  
 0.543
CCH79_00007183
Uncharacterized protein.
    
 0.535
CCH79_00008194
Uncharacterized protein.
     
 0.525
Your Current Organism:
Gambusia affinis
NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.