Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH79_00012868Uncharacterized protein. (133 aa)    
Predicted Functional Partners:
CCH79_00016340
VWFC domain-containing protein.
   
 
 0.809
NELL1
Neural EGFL like 1.
   
 
 0.809
ENSGAFP00000023766
Transforming growth factor, beta 1a.
    
   0.772
CCH79_00007269
Uncharacterized protein.
   
  
 0.760
CCH79_00005243
Uncharacterized protein.
   
  
 0.717
ENSGAFP00000029439
Coiled-coil domain containing 85B.
      
 0.471
CCH79_00015004
Uncharacterized protein.
      
 0.431
CCH79_00010666
Uncharacterized protein.
      
 0.431
CCH79_00003119
Uncharacterized protein.
      
 0.413
CCH79_00001717
Uncharacterized protein.
      
 0.413
Your Current Organism:
Gambusia affinis
NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish
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