STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH79_00019452Uncharacterized protein. (402 aa)    
Predicted Functional Partners:
CCH79_00002926
Uncharacterized protein.
   
 0.999
CCH79_00014221
XPA_C domain-containing protein.
    
 0.988
CCH79_00014255
BTB domain-containing protein.
  
 0.985
CCH79_00013697
DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family.
    
 0.984
CCH79_00015521
ERCC4 domain-containing protein.
    
 0.978
CCH79_00015352
Uncharacterized protein.
    
 0.974
CCH79_00016597
Uncharacterized protein.
   
 0.974
CCH79_00006955
Uncharacterized protein.
    
 0.974
CCH79_00017746
AA_TRNA_LIGASE_II domain-containing protein.
  
 0.973
CCH79_00008922
Uncharacterized protein.
   
 0.973
Your Current Organism:
Gambusia affinis
NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish
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