STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH79_00018030Uncharacterized protein. (513 aa)    
Predicted Functional Partners:
CCH79_00018942
RRM domain-containing protein.
    
 0.907
CCH79_00007090
Uncharacterized protein; Belongs to the actin family.
    
 0.854
CCH79_00007392
Uncharacterized protein.
   
 0.844
CCH79_00010536
PHD-type domain-containing protein.
    
 0.803
CCH79_00015451
CHHC U11-48K-type domain-containing protein.
   
 0.803
CCH79_00019115
Uncharacterized protein.
   
 0.798
SMARCB1
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1; Belongs to the SNF5 family.
   
 0.798
CCH79_00014322
RFX-type winged-helix domain-containing protein.
    
 0.795
ENSGAFP00000009889
Small nuclear ribonucleoprotein polypeptide E.
   
  0.792
CCH79_00014921
Sm domain-containing protein.
    
  0.791
Your Current Organism:
Gambusia affinis
NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.