STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH79_00003041Uncharacterized protein. (448 aa)    
Predicted Functional Partners:
CCH79_00009024
Uncharacterized protein.
    
  0.984
CCH79_00019881
LRRNT domain-containing protein.
    
 0.703
CCH79_00011219
LRRCT domain-containing protein.
    
 0.703
ENSGAFP00000020043
annotation not available
    
 0.703
CCH79_00007095
Uncharacterized protein.
    
 0.703
ENSGAFP00000020054
Si:ch211-117l17.7.
    
 0.703
CCH79_00020215
A2M_N_2 domain-containing protein.
   
 0.590
CCH79_00000610
Fibronectin type-II domain-containing protein.
   
 
 0.550
CCH79_00015363
AP-4 complex subunit epsilon; AP-4 forms a non clathrin-associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system; Belongs to the adaptor complexes large subunit family.
   
 
  0.525
CCH79_00020343
Protein YIPF.
   
 
  0.525
Your Current Organism:
Gambusia affinis
NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish
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