STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGAFP00000004491HIV-1 Tat specific factor 1. (453 aa)    
Predicted Functional Partners:
CCH79_00017110
SF3b1 domain-containing protein.
    
 
 0.979
ENSGAFP00000010602
DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.
   
 0.977
CCH79_00019692
Uncharacterized protein.
   
 
 0.959
ENSGAFP00000012552
Splicing factor 3a, subunit 2.
   
 
 0.957
CCH79_00018025
LRRcap domain-containing protein.
    
 
 0.952
CCH79_00012825
SAP domain-containing protein.
   
 
 0.944
CCH79_00013090
CPSF_A domain-containing protein.
    
 
 0.928
CCH79_00014921
Sm domain-containing protein.
   
   0.901
CCH79_00016385
Uncharacterized protein.
    
 
 0.892
CCH79_00006769
Uncharacterized protein.
    
 
 0.887
Your Current Organism:
Gambusia affinis
NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish
Server load: medium (54%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.