STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGAFP00000004753Bardet-Biedl syndrome 4. (577 aa)    
Predicted Functional Partners:
CCH79_00010794
PHTB1_N domain-containing protein.
   
 0.996
CCH79_00018880
BBS1 domain-containing protein.
   
 0.994
ENSGAFP00000022198
Bardet-Biedl syndrome 2.
   
 0.994
CCH79_00005567
Uncharacterized protein.
    
 0.993
CCH79_00004517
TPR_REGION domain-containing protein.
   
0.992
CCH79_00004037
Uncharacterized protein.
  
 0.934
CCH79_00004918
Uncharacterized protein.
    
 0.913
CCH79_00013876
PCM1_C domain-containing protein.
   
 
 0.904
CCH79_00002742
Bardet-Biedl syndrome 5 protein homolog; Required for ciliogenesis; Belongs to the BBS5 family.
    
 0.901
CCH79_00002743
BTB domain-containing protein.
    
 0.901
Your Current Organism:
Gambusia affinis
NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.