STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH79_00004114Hedgehog protein; Intercellular signal essential for a variety of patterning events during development. (411 aa)    
Predicted Functional Partners:
CCH79_00005285
SSD domain-containing protein.
   
 0.993
ENSGAFP00000018334
Patched 1.
   
 0.993
CCH79_00009197
Uncharacterized protein.
    
 0.988
ENSGAFP00000028998
annotation not available
    
 0.973
CCH79_00004205
Uncharacterized protein.
    
 0.972
CCH79_00000265
Uncharacterized protein.
   
 0.953
CCH79_00009032
Uncharacterized protein.
    
 0.933
ENSGAFP00000001689
Growth arrest-specific 1b.
    
 0.922
ENSGAFP00000003339
Low density lipoprotein receptor-related protein 2a.
     
 0.913
CCH79_00004391
SSD domain-containing protein.
   
 0.897
Your Current Organism:
Gambusia affinis
NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.