ENSGAFP00000004841 protein (Gambusia affinis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSGAFP00000004841

annotation not available (67 aa)

Predicted Functional Partners:

CCH79_00015791

0.895

CCH79_00019631

0.886

CCH79_00004102

0.875

ENSGAFP00000004902

0.863

CCH79_00005156

0.863

DYNC1I1

0.863

CCH79_00004550

0.854

ENSGAFP00000023775

0.837

CCH79_00000966

0.828

CCH79_00002369

0.827

Your Current Organism:

Gambusia affinis

NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCH79_00000966	ENSGAFP00000004841	ENSGAFP00000017144	ENSGAFP00000004841	Nup214_FG domain-containing protein.	annotation not available	0.828
CCH79_00002369	CCH79_00004102	ENSGAFP00000002708	ENSGAFP00000004368	Uncharacterized protein.	Uncharacterized protein.	0.606
CCH79_00002369	CCH79_00005156	ENSGAFP00000002708	ENSGAFP00000011701	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.947
CCH79_00002369	DYNC1I1	ENSGAFP00000002708	ENSGAFP00000026737	Uncharacterized protein.	Dynein cytoplasmic 1 intermediate chain 1.	0.947
CCH79_00002369	ENSGAFP00000004841	ENSGAFP00000002708	ENSGAFP00000004841	Uncharacterized protein.	annotation not available	0.827
CCH79_00002369	ENSGAFP00000004902	ENSGAFP00000002708	ENSGAFP00000004902	Uncharacterized protein.	Dynein, cytoplasmic 1, intermediate chain 2a.	0.947
CCH79_00004102	CCH79_00002369	ENSGAFP00000004368	ENSGAFP00000002708	Uncharacterized protein.	Uncharacterized protein.	0.606
CCH79_00004102	ENSGAFP00000004841	ENSGAFP00000004368	ENSGAFP00000004841	Uncharacterized protein.	annotation not available	0.875
CCH79_00004102	ENSGAFP00000023775	ENSGAFP00000004368	ENSGAFP00000023775	Uncharacterized protein.	annotation not available	0.759
CCH79_00004550	ENSGAFP00000004841	ENSGAFP00000025404	ENSGAFP00000004841	3'-5' exonuclease domain-containing protein.	annotation not available	0.854
CCH79_00005156	CCH79_00002369	ENSGAFP00000011701	ENSGAFP00000002708	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.947
CCH79_00005156	DYNC1I1	ENSGAFP00000011701	ENSGAFP00000026737	WD_REPEATS_REGION domain-containing protein.	Dynein cytoplasmic 1 intermediate chain 1.	0.901
CCH79_00005156	ENSGAFP00000004841	ENSGAFP00000011701	ENSGAFP00000004841	WD_REPEATS_REGION domain-containing protein.	annotation not available	0.863
CCH79_00005156	ENSGAFP00000004902	ENSGAFP00000011701	ENSGAFP00000004902	WD_REPEATS_REGION domain-containing protein.	Dynein, cytoplasmic 1, intermediate chain 2a.	0.901
CCH79_00005156	ENSGAFP00000023775	ENSGAFP00000011701	ENSGAFP00000023775	WD_REPEATS_REGION domain-containing protein.	annotation not available	0.759
CCH79_00015791	ENSGAFP00000004841	ENSGAFP00000018252	ENSGAFP00000004841	Uncharacterized protein.	annotation not available	0.895
CCH79_00019631	ENSGAFP00000004841	ENSGAFP00000003909	ENSGAFP00000004841	WD_REPEATS_REGION domain-containing protein.	annotation not available	0.886
DYNC1I1	CCH79_00002369	ENSGAFP00000026737	ENSGAFP00000002708	Dynein cytoplasmic 1 intermediate chain 1.	Uncharacterized protein.	0.947
DYNC1I1	CCH79_00005156	ENSGAFP00000026737	ENSGAFP00000011701	Dynein cytoplasmic 1 intermediate chain 1.	WD_REPEATS_REGION domain-containing protein.	0.901
DYNC1I1	ENSGAFP00000004841	ENSGAFP00000026737	ENSGAFP00000004841	Dynein cytoplasmic 1 intermediate chain 1.	annotation not available	0.863