ENSGAFP00000004902 protein (Gambusia affinis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSGAFP00000004902

Dynein, cytoplasmic 1, intermediate chain 2a. (627 aa)

Predicted Functional Partners:

ENSGAFP00000018413

0.972

CCH79_00008500

0.972

ENSGAFP00000019845

0.956

DYNC2H1

0.939

ENSGAFP00000013475

0.939

CCH79_00015168

0.935

CCH79_00015170

0.935

CCH79_00003734

0.932

CCH79_00008122

0.929

CCH79_00006512

0.928

Your Current Organism:

Gambusia affinis

NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCH79_00003734	CCH79_00006512	ENSGAFP00000013468	ENSGAFP00000004238	Uncharacterized protein.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	0.905
CCH79_00003734	CCH79_00008122	ENSGAFP00000013468	ENSGAFP00000017615	Uncharacterized protein.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.882
CCH79_00003734	CCH79_00008500	ENSGAFP00000013468	ENSGAFP00000027324	Uncharacterized protein.	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.	0.928
CCH79_00003734	CCH79_00015168	ENSGAFP00000013468	ENSGAFP00000011890	Uncharacterized protein.	Uncharacterized protein.	0.978
CCH79_00003734	CCH79_00015170	ENSGAFP00000013468	ENSGAFP00000011905	Uncharacterized protein.	Uncharacterized protein.	0.978
CCH79_00003734	ENSGAFP00000004902	ENSGAFP00000013468	ENSGAFP00000004902	Uncharacterized protein.	Dynein, cytoplasmic 1, intermediate chain 2a.	0.932
CCH79_00003734	ENSGAFP00000013475	ENSGAFP00000013468	ENSGAFP00000013475	Uncharacterized protein.	annotation not available	0.422
CCH79_00003734	ENSGAFP00000018413	ENSGAFP00000013468	ENSGAFP00000018413	Uncharacterized protein.	Dynein, cytoplasmic 1, light intermediate chain 2.	0.930
CCH79_00003734	ENSGAFP00000019845	ENSGAFP00000013468	ENSGAFP00000019845	Uncharacterized protein.	Dynactin 2 (p50).	0.793
CCH79_00006512	CCH79_00003734	ENSGAFP00000004238	ENSGAFP00000013468	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	Uncharacterized protein.	0.905
CCH79_00006512	CCH79_00008122	ENSGAFP00000004238	ENSGAFP00000017615	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.966
CCH79_00006512	CCH79_00015168	ENSGAFP00000004238	ENSGAFP00000011890	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	Uncharacterized protein.	0.859
CCH79_00006512	CCH79_00015170	ENSGAFP00000004238	ENSGAFP00000011905	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	Uncharacterized protein.	0.859
CCH79_00006512	DYNC2H1	ENSGAFP00000004238	ENSGAFP00000013456	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	Dynein cytoplasmic 2 heavy chain 1.	0.905
CCH79_00006512	ENSGAFP00000004902	ENSGAFP00000004238	ENSGAFP00000004902	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	Dynein, cytoplasmic 1, intermediate chain 2a.	0.928
CCH79_00006512	ENSGAFP00000013475	ENSGAFP00000004238	ENSGAFP00000013475	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	annotation not available	0.905
CCH79_00008122	CCH79_00003734	ENSGAFP00000017615	ENSGAFP00000013468	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Uncharacterized protein.	0.882
CCH79_00008122	CCH79_00006512	ENSGAFP00000017615	ENSGAFP00000004238	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	0.966
CCH79_00008122	CCH79_00008500	ENSGAFP00000017615	ENSGAFP00000027324	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.	0.877
CCH79_00008122	CCH79_00015168	ENSGAFP00000017615	ENSGAFP00000011890	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Uncharacterized protein.	0.813