STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH79_00001412IF rod domain-containing protein; Belongs to the intermediate filament family. (455 aa)    
Predicted Functional Partners:
CCH79_00005137
Phosducin domain-containing protein.
   
  
 0.878
CCH79_00009425
Phosducin domain-containing protein.
   
  
 0.878
CCH79_00001001
Uncharacterized protein.
   
    0.797
CCH79_00007112
Guanylate kinase-like domain-containing protein.
   
  0.672
ENSGAFP00000004801
Peripherin.
    
 
0.665
CCH79_00020221
Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.
   
 0.643
CCH79_00018852
Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.
   
 0.643
CCH79_00002689
Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.
   
 0.643
CCH79_00019312
Asp_Arg_Hydrox domain-containing protein.
   
 
 0.642
CCH79_00000672
Uncharacterized protein.
   
 0.631
Your Current Organism:
Gambusia affinis
NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish
Server load: medium (46%) [HD]