STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH79_00008333Uncharacterized protein. (323 aa)    
Predicted Functional Partners:
CCH79_00004887
Uncharacterized protein.
   
 
 0.587
CCH79_00007137
Uncharacterized protein.
   
    0.523
CCH79_00017186
J domain-containing protein.
  
  
 0.514
CCH79_00020739
ATP-grasp domain-containing protein.
  
  
 0.508
CCH79_00020741
Uncharacterized protein.
  
  
 0.508
CCH79_00007134
Uncharacterized protein.
   
   0.503
CCH79_00012070
Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.
   
  
 0.497
CCH79_00014248
Peptidase_M24 domain-containing protein.
  
 
 0.495
CCH79_00005691
Uncharacterized protein; Belongs to the peptidase M24B family.
  
 
 0.495
CCH79_00004072
RAP domain-containing protein.
    
 0.494
Your Current Organism:
Gambusia affinis
NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish
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