STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH79_00018060POP4 domain-containing protein. (181 aa)    
Predicted Functional Partners:
CCH79_00018873
Uncharacterized protein.
   
 0.996
CCH79_00009825
Ribonuclease P/MRP protein subunit POP5; Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends.
   
 0.996
POP1
Uncharacterized protein.
   
 0.996
ENSGAFP00000010680
Ribonuclease P 21 subunit.
    
 0.994
ENSGAFP00000011927
annotation not available
   
 0.994
ENSGAFP00000006172
annotation not available
    
 0.993
ENSGAFP00000015248
Ribonuclease P and MRP subunit p25, b.
    
 0.992
ENSGAFP00000021456
annotation not available
    
 0.964
CCH79_00015539
Alba domain-containing protein.
    
 0.958
CCH79_00014719
Kri1_C domain-containing protein.
   
  0.956
Your Current Organism:
Gambusia affinis
NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish
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