CCH79_00007565 protein (Gambusia affinis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CCH79_00007565

Uncharacterized protein. (507 aa)

Predicted Functional Partners:

CCH79_00020488

0.999

CCH79_00015713

0.988

CCH79_00020178

0.908

CCH79_00016027

0.908

CCH79_00015473

0.842

CCH79_00002343

0.837

CCH79_00019981

0.835

CCH79_00015477

0.792

ENSGAFP00000014204

0.788

CCH79_00010566

0.744

Your Current Organism:

Gambusia affinis

NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCH79_00002343	CCH79_00007565	ENSGAFP00000000484	ENSGAFP00000005265	PINc domain-containing protein.	Uncharacterized protein.	0.837
CCH79_00002343	CCH79_00010566	ENSGAFP00000000484	ENSGAFP00000028196	PINc domain-containing protein.	mRNA_decap_C domain-containing protein.	0.844
CCH79_00002343	CCH79_00015473	ENSGAFP00000000484	ENSGAFP00000032220	PINc domain-containing protein.	PINc domain-containing protein.	0.939
CCH79_00002343	CCH79_00015477	ENSGAFP00000000484	ENSGAFP00000032228	PINc domain-containing protein.	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	0.909
CCH79_00002343	CCH79_00015713	ENSGAFP00000000484	ENSGAFP00000008071	PINc domain-containing protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.898
CCH79_00002343	CCH79_00016027	ENSGAFP00000000484	ENSGAFP00000028981	PINc domain-containing protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.660
CCH79_00002343	CCH79_00019981	ENSGAFP00000000484	ENSGAFP00000028098	PINc domain-containing protein.	Uncharacterized protein.	0.903
CCH79_00002343	CCH79_00020178	ENSGAFP00000000484	ENSGAFP00000010446	PINc domain-containing protein.	FAT domain-containing protein.	0.660
CCH79_00002343	CCH79_00020488	ENSGAFP00000000484	ENSGAFP00000030462	PINc domain-containing protein.	Uncharacterized protein.	0.835
CCH79_00002343	ENSGAFP00000014204	ENSGAFP00000000484	ENSGAFP00000014204	PINc domain-containing protein.	Proline-rich nuclear receptor coactivator 2.	0.711
CCH79_00007565	CCH79_00002343	ENSGAFP00000005265	ENSGAFP00000000484	Uncharacterized protein.	PINc domain-containing protein.	0.837
CCH79_00007565	CCH79_00010566	ENSGAFP00000005265	ENSGAFP00000028196	Uncharacterized protein.	mRNA_decap_C domain-containing protein.	0.744
CCH79_00007565	CCH79_00015473	ENSGAFP00000005265	ENSGAFP00000032220	Uncharacterized protein.	PINc domain-containing protein.	0.842
CCH79_00007565	CCH79_00015477	ENSGAFP00000005265	ENSGAFP00000032228	Uncharacterized protein.	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	0.792
CCH79_00007565	CCH79_00015713	ENSGAFP00000005265	ENSGAFP00000008071	Uncharacterized protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.988
CCH79_00007565	CCH79_00016027	ENSGAFP00000005265	ENSGAFP00000028981	Uncharacterized protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.908
CCH79_00007565	CCH79_00019981	ENSGAFP00000005265	ENSGAFP00000028098	Uncharacterized protein.	Uncharacterized protein.	0.835
CCH79_00007565	CCH79_00020178	ENSGAFP00000005265	ENSGAFP00000010446	Uncharacterized protein.	FAT domain-containing protein.	0.908
CCH79_00007565	CCH79_00020488	ENSGAFP00000005265	ENSGAFP00000030462	Uncharacterized protein.	Uncharacterized protein.	0.999
CCH79_00007565	ENSGAFP00000014204	ENSGAFP00000005265	ENSGAFP00000014204	Uncharacterized protein.	Proline-rich nuclear receptor coactivator 2.	0.788