STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGAFP00000005422High mobility group AT-hook 1a. (100 aa)    
Predicted Functional Partners:
ENSGAFP00000016478
annotation not available
  
 
 0.770
ENSGAFP00000009781
Jun proto-oncogene, AP-1 transcription factor subunit.
    
 
 0.632
CCH79_00017762
BZIP domain-containing protein.
    
 
 0.632
CCH79_00009799
TPR_REGION domain-containing protein.
    
  0.627
CCH79_00012961
Cellular tumor antigen p53; Acts as a tumor suppressor in many tumor types; induces growth arrest or apoptosis depending on the physiological circumstances and cell type. Involved in cell cycle regulation as a trans-activator that acts to negatively regulate cell division by controlling a set of genes required for this process. One of the activated genes is an inhibitor of cyclin-dependent kinases. Apoptosis induction seems to be mediated either by stimulation of BAX and FAS antigen expression, or by repression of Bcl-2 expression; Belongs to the p53 family.
    
 0.552
CCH79_00004178
Uncharacterized protein.
   
  
 0.547
ENSGAFP00000008999
annotation not available
      
 0.531
ENSGAFP00000023872
annotation not available
    
  0.525
ENSGAFP00000023876
annotation not available
    
  0.525
CCH79_00002466
IRF tryptophan pentad repeat domain-containing protein.
    
 
 0.508
Your Current Organism:
Gambusia affinis
NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish
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