STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH79_00011715TEA domain-containing protein. (411 aa)    
Predicted Functional Partners:
CCH79_00012090
Uncharacterized protein.
   
 0.943
CCH79_00000607
Uncharacterized protein.
    
 
 0.805
ENSGAFP00000018730
Vestigial-like family member 4b.
    
 
 0.701
CCH79_00006633
Uncharacterized protein.
    
 
 0.701
ENSGAFP00000009160
Transcription factor 7.
    
  0.672
CCH79_00009159
HMG box domain-containing protein.
    
  0.672
CCH79_00006757
Uncharacterized protein.
    
 
 0.645
ENSGAFP00000000624
annotation not available
    
 0.628
ENSGAFP00000000649
annotation not available
    
 0.628
CCH79_00001873
Uncharacterized protein.
    
 0.628
Your Current Organism:
Gambusia affinis
NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.