CCH79_00003075 protein (Gambusia affinis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CCH79_00003075

Uncharacterized protein. (722 aa)

Predicted Functional Partners:

ALDH18A1

0.999

CCH79_00003200

0.999

CCH79_00019172

0.986

CCH79_00003162

0.985

CCH79_00017680

0.985

CCH79_00005988

0.971

CCH79_00016937

0.953

CCH79_00013790

0.953

CCH79_00006587

0.953

ENSGAFP00000021505

0.953

Your Current Organism:

Gambusia affinis

NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALDH18A1	CCH79_00003075	ENSGAFP00000005826	ENSGAFP00000005643	Uncharacterized protein.	Uncharacterized protein.	0.999
ALDH18A1	CCH79_00003162	ENSGAFP00000005826	ENSGAFP00000013181	Uncharacterized protein.	ELFV_dehydrog domain-containing protein; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.985
ALDH18A1	CCH79_00003200	ENSGAFP00000005826	ENSGAFP00000015259	Uncharacterized protein.	Uncharacterized protein.	0.999
ALDH18A1	CCH79_00005988	ENSGAFP00000005826	ENSGAFP00000011113	Uncharacterized protein.	Uncharacterized protein.	0.971
ALDH18A1	CCH79_00006587	ENSGAFP00000005826	ENSGAFP00000018126	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.953
ALDH18A1	CCH79_00013790	ENSGAFP00000005826	ENSGAFP00000015999	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.953
ALDH18A1	CCH79_00016937	ENSGAFP00000005826	ENSGAFP00000000608	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.953
ALDH18A1	CCH79_00017680	ENSGAFP00000005826	ENSGAFP00000020966	Uncharacterized protein.	ELFV_dehydrog domain-containing protein.	0.985
ALDH18A1	CCH79_00019172	ENSGAFP00000005826	ENSGAFP00000028065	Uncharacterized protein.	Uncharacterized protein; Belongs to the aldehyde dehydrogenase family.	0.986
ALDH18A1	ENSGAFP00000021505	ENSGAFP00000005826	ENSGAFP00000021505	Uncharacterized protein.	Glutaminase 2b (liver, mitochondrial).	0.953
CCH79_00003075	ALDH18A1	ENSGAFP00000005643	ENSGAFP00000005826	Uncharacterized protein.	Uncharacterized protein.	0.999
CCH79_00003075	CCH79_00003162	ENSGAFP00000005643	ENSGAFP00000013181	Uncharacterized protein.	ELFV_dehydrog domain-containing protein; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.985
CCH79_00003075	CCH79_00003200	ENSGAFP00000005643	ENSGAFP00000015259	Uncharacterized protein.	Uncharacterized protein.	0.999
CCH79_00003075	CCH79_00005988	ENSGAFP00000005643	ENSGAFP00000011113	Uncharacterized protein.	Uncharacterized protein.	0.971
CCH79_00003075	CCH79_00006587	ENSGAFP00000005643	ENSGAFP00000018126	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.953
CCH79_00003075	CCH79_00013790	ENSGAFP00000005643	ENSGAFP00000015999	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.953
CCH79_00003075	CCH79_00016937	ENSGAFP00000005643	ENSGAFP00000000608	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.953
CCH79_00003075	CCH79_00017680	ENSGAFP00000005643	ENSGAFP00000020966	Uncharacterized protein.	ELFV_dehydrog domain-containing protein.	0.985
CCH79_00003075	CCH79_00019172	ENSGAFP00000005643	ENSGAFP00000028065	Uncharacterized protein.	Uncharacterized protein; Belongs to the aldehyde dehydrogenase family.	0.986
CCH79_00003075	ENSGAFP00000021505	ENSGAFP00000005643	ENSGAFP00000021505	Uncharacterized protein.	Glutaminase 2b (liver, mitochondrial).	0.953