CCH79_00013917 protein (Gambusia affinis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CCH79_00013917

Protein kinase domain-containing protein. (660 aa)

Predicted Functional Partners:

CCH79_00013944

0.881

ENSGAFP00000032089

0.840

CCH79_00006949

0.835

CCH79_00010310

0.803

CCH79_00020381

0.779

CCH79_00018213

0.750

CCH79_00015828

0.736

CCH79_00014620

0.725

CCH79_00009693

0.716

CCH79_00012928

0.707

Your Current Organism:

Gambusia affinis

NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCH79_00006949	CCH79_00009693	ENSGAFP00000017811	ENSGAFP00000031125	RIO domain-containing protein.	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	0.977
CCH79_00006949	CCH79_00010310	ENSGAFP00000017811	ENSGAFP00000019254	RIO domain-containing protein.	Bms1-type G domain-containing protein.	0.999
CCH79_00006949	CCH79_00013917	ENSGAFP00000017811	ENSGAFP00000005787	RIO domain-containing protein.	Protein kinase domain-containing protein.	0.835
CCH79_00006949	CCH79_00013944	ENSGAFP00000017811	ENSGAFP00000006886	RIO domain-containing protein.	Uncharacterized protein.	0.999
CCH79_00006949	CCH79_00014620	ENSGAFP00000017811	ENSGAFP00000029941	RIO domain-containing protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.999
CCH79_00006949	CCH79_00015828	ENSGAFP00000017811	ENSGAFP00000018806	RIO domain-containing protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.967
CCH79_00006949	CCH79_00018213	ENSGAFP00000017811	ENSGAFP00000023267	RIO domain-containing protein.	KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family.	0.998
CCH79_00006949	CCH79_00020381	ENSGAFP00000017811	ENSGAFP00000008992	RIO domain-containing protein.	RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family.	0.999
CCH79_00006949	ENSGAFP00000032089	ENSGAFP00000017811	ENSGAFP00000032089	RIO domain-containing protein.	Bystin-like.	0.997
CCH79_00009693	CCH79_00006949	ENSGAFP00000031125	ENSGAFP00000017811	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	RIO domain-containing protein.	0.977
CCH79_00009693	CCH79_00010310	ENSGAFP00000031125	ENSGAFP00000019254	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	Bms1-type G domain-containing protein.	0.973
CCH79_00009693	CCH79_00013917	ENSGAFP00000031125	ENSGAFP00000005787	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	Protein kinase domain-containing protein.	0.716
CCH79_00009693	CCH79_00013944	ENSGAFP00000031125	ENSGAFP00000006886	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	Uncharacterized protein.	0.977
CCH79_00009693	CCH79_00014620	ENSGAFP00000031125	ENSGAFP00000029941	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.999
CCH79_00009693	CCH79_00015828	ENSGAFP00000031125	ENSGAFP00000018806	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.997
CCH79_00009693	CCH79_00018213	ENSGAFP00000031125	ENSGAFP00000023267	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family.	0.999
CCH79_00009693	CCH79_00020381	ENSGAFP00000031125	ENSGAFP00000008992	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family.	0.998
CCH79_00009693	ENSGAFP00000032089	ENSGAFP00000031125	ENSGAFP00000032089	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	Bystin-like.	0.990
CCH79_00010310	CCH79_00006949	ENSGAFP00000019254	ENSGAFP00000017811	Bms1-type G domain-containing protein.	RIO domain-containing protein.	0.999
CCH79_00010310	CCH79_00009693	ENSGAFP00000019254	ENSGAFP00000031125	Bms1-type G domain-containing protein.	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	0.973