STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH79_00005890Uncharacterized protein. (174 aa)    
Predicted Functional Partners:
CCH79_00006517
UBIQUITIN_CONJUGAT_2 domain-containing protein.
   
 
 0.983
CCH79_00017947
Uncharacterized protein.
    
 0.967
ENSGAFP00000014828
SFI1 centrin binding protein.
    
 
 0.890
ENY2
Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...]
   
 
 0.881
RAD23B
Uncharacterized protein.
   
 0.832
ENSGAFP00000020013
RAD23 homolog A, nucleotide excision repair protein a.
   
 0.832
CCH79_00017265
PCI domain-containing protein.
    
 
 0.822
CCH79_00013775
Uncharacterized protein.
    
 
 0.814
CCH79_00013211
Uncharacterized protein; Belongs to the MAGUK family.
    
 0.804
CCH79_00017139
Uncharacterized protein; Belongs to the MAGUK family.
    
 0.804
Your Current Organism:
Gambusia affinis
NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.