CCH79_00002785 protein (Gambusia affinis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CCH79_00002785

Uncharacterized protein. (327 aa)

Predicted Functional Partners:

ENSGAFP00000005998

0.789

CCH79_00018320

0.789

CCH79_00011159

0.598

CCH79_00011275

0.572

CCH79_00007624

0.563

CCH79_00008426

0.563

ENSGAFP00000028660

0.554

CCH79_00002786

0.553

CCH79_00002787

0.543

CCH79_00006754

0.489

Your Current Organism:

Gambusia affinis

NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCH79_00002785	CCH79_00002786	ENSGAFP00000005988	ENSGAFP00000006032	Uncharacterized protein.	Homeobox domain-containing protein.	0.553
CCH79_00002785	CCH79_00002787	ENSGAFP00000005988	ENSGAFP00000006010	Uncharacterized protein.	Homeobox domain-containing protein.	0.543
CCH79_00002785	CCH79_00006754	ENSGAFP00000005988	ENSGAFP00000012032	Uncharacterized protein.	Homeobox domain-containing protein.	0.489
CCH79_00002785	CCH79_00007624	ENSGAFP00000005988	ENSGAFP00000008176	Uncharacterized protein.	Homeobox domain-containing protein.	0.563
CCH79_00002785	CCH79_00008426	ENSGAFP00000005988	ENSGAFP00000026437	Uncharacterized protein.	Uncharacterized protein.	0.563
CCH79_00002785	CCH79_00011159	ENSGAFP00000005988	ENSGAFP00000028452	Uncharacterized protein.	Uncharacterized protein.	0.598
CCH79_00002785	CCH79_00011275	ENSGAFP00000005988	ENSGAFP00000012670	Uncharacterized protein.	Homeobox domain-containing protein.	0.572
CCH79_00002785	CCH79_00018320	ENSGAFP00000005988	ENSGAFP00000018530	Uncharacterized protein.	Homeobox domain-containing protein.	0.789
CCH79_00002785	ENSGAFP00000005998	ENSGAFP00000005988	ENSGAFP00000005998	Uncharacterized protein.	Homeobox D9a.	0.789
CCH79_00002785	ENSGAFP00000028660	ENSGAFP00000005988	ENSGAFP00000028660	Uncharacterized protein.	Collagen, type XI, alpha 2.	0.554
CCH79_00002786	CCH79_00002785	ENSGAFP00000006032	ENSGAFP00000005988	Homeobox domain-containing protein.	Uncharacterized protein.	0.553
CCH79_00002786	CCH79_00002787	ENSGAFP00000006032	ENSGAFP00000006010	Homeobox domain-containing protein.	Homeobox domain-containing protein.	0.999
CCH79_00002786	CCH79_00006754	ENSGAFP00000006032	ENSGAFP00000012032	Homeobox domain-containing protein.	Homeobox domain-containing protein.	0.570
CCH79_00002786	CCH79_00011275	ENSGAFP00000006032	ENSGAFP00000012670	Homeobox domain-containing protein.	Homeobox domain-containing protein.	0.468
CCH79_00002786	CCH79_00018320	ENSGAFP00000006032	ENSGAFP00000018530	Homeobox domain-containing protein.	Homeobox domain-containing protein.	0.554
CCH79_00002786	ENSGAFP00000005998	ENSGAFP00000006032	ENSGAFP00000005998	Homeobox domain-containing protein.	Homeobox D9a.	0.554
CCH79_00002787	CCH79_00002785	ENSGAFP00000006010	ENSGAFP00000005988	Homeobox domain-containing protein.	Uncharacterized protein.	0.543
CCH79_00002787	CCH79_00002786	ENSGAFP00000006010	ENSGAFP00000006032	Homeobox domain-containing protein.	Homeobox domain-containing protein.	0.999
CCH79_00002787	CCH79_00006754	ENSGAFP00000006010	ENSGAFP00000012032	Homeobox domain-containing protein.	Homeobox domain-containing protein.	0.582
CCH79_00002787	CCH79_00018320	ENSGAFP00000006010	ENSGAFP00000018530	Homeobox domain-containing protein.	Homeobox domain-containing protein.	0.567