STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGAFP00000006006tRNA methyltransferase 5. (454 aa)    
Predicted Functional Partners:
CCH79_00012553
Uncharacterized protein.
   
 
 0.901
CCH79_00009137
Flavokinase domain-containing protein.
     
 0.840
CCH79_00017328
TYW3 domain-containing protein.
  
 
 0.795
ENSGAFP00000004456
Methyltransferase like 1.
   
  
 0.697
CCH79_00020251
Uncharacterized protein.
  
 
 0.689
CCH79_00020253
Flavodoxin-like domain-containing protein.
  
 
 0.689
CCH79_00016599
DRBM domain-containing protein.
   
  
 0.642
CCH79_00013090
CPSF_A domain-containing protein.
   
 
  0.637
CCH79_00000173
Uncharacterized protein.
   
  
 0.634
CCH79_00007781
tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A; Catalytic subunit of tRNA (adenine-N(1)-)-methyltransferase, which catalyzes the formation of N(1)-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA.
   
  
 0.633
Your Current Organism:
Gambusia affinis
NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish
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