CCH79_00017214 protein (Gambusia affinis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CCH79_00017214

Uncharacterized protein. (384 aa)

Predicted Functional Partners:

ENSGAFP00000030274

0.853

CCH79_00020580

0.761

SUCLG1

0.726

CCH79_00014099

0.721

ENSGAFP00000025677

0.721

CCH79_00010416

0.721

CCH79_00009199

0.721

ENSGAFP00000030750

0.697

GLO1

0.688

CCH79_00005045

0.688

Your Current Organism:

Gambusia affinis

NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCH79_00005045	CCH79_00009199	ENSGAFP00000018819	ENSGAFP00000026288	VOC domain-containing protein.	Uncharacterized protein.	0.774
CCH79_00005045	CCH79_00017214	ENSGAFP00000018819	ENSGAFP00000006174	VOC domain-containing protein.	Uncharacterized protein.	0.688
CCH79_00005045	CCH79_00020580	ENSGAFP00000018819	ENSGAFP00000009440	VOC domain-containing protein.	Succinate-CoA ligase subunit beta.	0.706
CCH79_00005045	ENSGAFP00000030274	ENSGAFP00000018819	ENSGAFP00000030274	VOC domain-containing protein.	succinate-CoA ligase, GDP-forming, beta subunit.	0.595
CCH79_00005045	ENSGAFP00000030750	ENSGAFP00000018819	ENSGAFP00000030750	VOC domain-containing protein.	Citrate synthase.	0.789
CCH79_00005045	SUCLG1	ENSGAFP00000018819	ENSGAFP00000030402	VOC domain-containing protein.	Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and specificity for either ATP or GTP is provided by different beta subunits.	0.824
CCH79_00009199	CCH79_00005045	ENSGAFP00000026288	ENSGAFP00000018819	Uncharacterized protein.	VOC domain-containing protein.	0.774
CCH79_00009199	CCH79_00017214	ENSGAFP00000026288	ENSGAFP00000006174	Uncharacterized protein.	Uncharacterized protein.	0.721
CCH79_00010416	CCH79_00017214	ENSGAFP00000025682	ENSGAFP00000006174	MINDY_DUB domain-containing protein.	Uncharacterized protein.	0.721
CCH79_00010416	ENSGAFP00000025677	ENSGAFP00000025682	ENSGAFP00000025677	MINDY_DUB domain-containing protein.	annotation not available	0.452
CCH79_00014099	CCH79_00017214	ENSGAFP00000019710	ENSGAFP00000006174	MINDY_DUB domain-containing protein.	Uncharacterized protein.	0.721
CCH79_00017214	CCH79_00005045	ENSGAFP00000006174	ENSGAFP00000018819	Uncharacterized protein.	VOC domain-containing protein.	0.688
CCH79_00017214	CCH79_00009199	ENSGAFP00000006174	ENSGAFP00000026288	Uncharacterized protein.	Uncharacterized protein.	0.721
CCH79_00017214	CCH79_00010416	ENSGAFP00000006174	ENSGAFP00000025682	Uncharacterized protein.	MINDY_DUB domain-containing protein.	0.721
CCH79_00017214	CCH79_00014099	ENSGAFP00000006174	ENSGAFP00000019710	Uncharacterized protein.	MINDY_DUB domain-containing protein.	0.721
CCH79_00017214	CCH79_00020580	ENSGAFP00000006174	ENSGAFP00000009440	Uncharacterized protein.	Succinate-CoA ligase subunit beta.	0.761
CCH79_00017214	ENSGAFP00000025677	ENSGAFP00000006174	ENSGAFP00000025677	Uncharacterized protein.	annotation not available	0.721
CCH79_00017214	ENSGAFP00000030274	ENSGAFP00000006174	ENSGAFP00000030274	Uncharacterized protein.	succinate-CoA ligase, GDP-forming, beta subunit.	0.853
CCH79_00017214	ENSGAFP00000030750	ENSGAFP00000006174	ENSGAFP00000030750	Uncharacterized protein.	Citrate synthase.	0.697
CCH79_00017214	GLO1	ENSGAFP00000006174	ENSGAFP00000000989	Uncharacterized protein.	Lactoylglutathione lyase; Catalyzes the conversion of hemimercaptal, formed from methylglyoxal and glutathione, to S-lactoylglutathione.	0.688