STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH79_00008672RING-type domain-containing protein. (289 aa)    
Predicted Functional Partners:
ENSGAFP00000006885
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.814
CCH79_00011531
Uncharacterized protein.
   
 0.810
CCH79_00018543
Uncharacterized protein.
   
 
 0.791
ENSGAFP00000021072
Ribosomal protein S27a.
    
 0.785
ENSGAFP00000011060
annotation not available
    
 0.749
CCH79_00012046
Uncharacterized protein.
   
 0.746
CCH79_00007441
Uncharacterized protein.
   
 0.743
CCH79_00008889
Uncharacterized protein.
   
  0.731
ENSGAFP00000005993
Lysine methyltransferase 5Aa.
   
  0.730
CCH79_00017912
Uncharacterized protein.
   
  0.730
Your Current Organism:
Gambusia affinis
NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish
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