CCH79_00001431 protein (Gambusia affinis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CCH79_00001431

Uncharacterized protein. (786 aa)

Predicted Functional Partners:

CCH79_00003105

0.840

CCH79_00007361

0.789

HOOK3

0.789

CCH79_00002663

0.735

CCH79_00004542

0.719

CCH79_00006225

0.705

CCH79_00013144

0.691

CCH79_00002198

0.689

CCH79_00006084

0.651

CCH79_00004816

0.598

Your Current Organism:

Gambusia affinis

NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCH79_00001431	CCH79_00002198	ENSGAFP00000006281	ENSGAFP00000022184	Uncharacterized protein.	Uncharacterized protein.	0.689
CCH79_00001431	CCH79_00002663	ENSGAFP00000006281	ENSGAFP00000031622	Uncharacterized protein.	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	0.735
CCH79_00001431	CCH79_00003105	ENSGAFP00000006281	ENSGAFP00000007348	Uncharacterized protein.	Uncharacterized protein.	0.840
CCH79_00001431	CCH79_00004542	ENSGAFP00000006281	ENSGAFP00000025301	Uncharacterized protein.	Uncharacterized protein.	0.719
CCH79_00001431	CCH79_00004816	ENSGAFP00000006281	ENSGAFP00000001817	Uncharacterized protein.	Homeobox domain-containing protein.	0.598
CCH79_00001431	CCH79_00006084	ENSGAFP00000006281	ENSGAFP00000013473	Uncharacterized protein.	Uncharacterized protein.	0.651
CCH79_00001431	CCH79_00006225	ENSGAFP00000006281	ENSGAFP00000014923	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.705
CCH79_00001431	CCH79_00007361	ENSGAFP00000006281	ENSGAFP00000009230	Uncharacterized protein.	Calponin-homology (CH) domain-containing protein.	0.789
CCH79_00001431	CCH79_00013144	ENSGAFP00000006281	ENSGAFP00000004896	Uncharacterized protein.	Ig-like domain-containing protein.	0.691
CCH79_00001431	HOOK3	ENSGAFP00000006281	ENSGAFP00000009334	Uncharacterized protein.	Calponin-homology (CH) domain-containing protein.	0.789
CCH79_00002198	CCH79_00001431	ENSGAFP00000022184	ENSGAFP00000006281	Uncharacterized protein.	Uncharacterized protein.	0.689
CCH79_00002663	CCH79_00001431	ENSGAFP00000031622	ENSGAFP00000006281	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	Uncharacterized protein.	0.735
CCH79_00002663	CCH79_00006225	ENSGAFP00000031622	ENSGAFP00000014923	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.970
CCH79_00002663	CCH79_00007361	ENSGAFP00000031622	ENSGAFP00000009230	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	Calponin-homology (CH) domain-containing protein.	0.771
CCH79_00002663	HOOK3	ENSGAFP00000031622	ENSGAFP00000009334	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	Calponin-homology (CH) domain-containing protein.	0.771
CCH79_00003105	CCH79_00001431	ENSGAFP00000007348	ENSGAFP00000006281	Uncharacterized protein.	Uncharacterized protein.	0.840
CCH79_00004542	CCH79_00001431	ENSGAFP00000025301	ENSGAFP00000006281	Uncharacterized protein.	Uncharacterized protein.	0.719
CCH79_00004542	CCH79_00013144	ENSGAFP00000025301	ENSGAFP00000004896	Uncharacterized protein.	Ig-like domain-containing protein.	0.485
CCH79_00004816	CCH79_00001431	ENSGAFP00000001817	ENSGAFP00000006281	Homeobox domain-containing protein.	Uncharacterized protein.	0.598
CCH79_00006084	CCH79_00001431	ENSGAFP00000013473	ENSGAFP00000006281	Uncharacterized protein.	Uncharacterized protein.	0.651