STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH79_00004139Uncharacterized protein. (258 aa)    
Predicted Functional Partners:
CCH79_00012875
Uncharacterized protein.
    
 0.751
CCH79_00002220
Uncharacterized protein.
    
 0.703
CCH79_00010016
V(D)J recombination-activating protein 1; Catalytic component of the RAG complex, a multiprotein complex that mediates the DNA cleavage phase during V(D)J recombination. V(D)J recombination assembles a diverse repertoire of immunoglobulin and T-cell receptor genes in developing B and T- lymphocytes through rearrangement of different V (variable), in some cases D (diversity), and J (joining) gene segments. In the RAG complex, RAG1 mediates the DNA-binding to the conserved recombination signal sequences (RSS) and catalyzes the DNA cleavage activities by introducing a double-strand break [...]
   
 
 0.641
CCH79_00002828
T-box_assoc domain-containing protein.
    
 
 0.619
CCH79_00004754
TGF_BETA_2 domain-containing protein.
    
 
 0.615
ENSGAFP00000012895
Forkhead box D3.
    
 0.609
CCH79_00020139
TF_AP-2 domain-containing protein.
   
 
 0.604
CCH79_00000373
Uncharacterized protein.
    
  0.598
CCH79_00002909
Uncharacterized protein.
    
  0.583
CCH79_00001115
BACK domain-containing protein.
    
 0.582
Your Current Organism:
Gambusia affinis
NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish
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