STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH79_00012372Uncharacterized protein. (2630 aa)    
Predicted Functional Partners:
ENSGAFP00000032183
FA complementation group D2.
   
 0.854
ENSGAFP00000003099
annotation not available
   
 
 0.844
CCH79_00018818
Uncharacterized protein.
  
 
 0.808
CCH79_00020727
RNase H domain-containing protein.
    
 0.802
CCH79_00003838
Mre11_DNA_bind domain-containing protein; Belongs to the MRE11/RAD32 family.
  
 0.800
CCH79_00005546
Uncharacterized protein.
  
  
 0.774
CCH79_00003292
SF4 helicase domain-containing protein.
   
 
 0.768
CCH79_00010005
Uncharacterized protein.
   
 0.756
FEN1
Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]
  
 
 0.748
CCH79_00017050
Uncharacterized protein.
  
 
 0.748
Your Current Organism:
Gambusia affinis
NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.