STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH79_00002429Uncharacterized protein. (1048 aa)    
Predicted Functional Partners:
CCH79_00016941
zf-C3H1 domain-containing protein.
   
 
 0.751
PABPN1L
PABPN1 like, cytoplasmic.
    
 
 0.648
CCH79_00015998
RRM domain-containing protein.
    
 
 0.648
CCH79_00001026
Uncharacterized protein.
   
 
 0.610
CCH79_00019050
RRM domain-containing protein.
    
 
 0.583
CCH79_00008627
Uncharacterized protein.
   
 
 0.537
YTHDF1
YTH domain-containing protein.
   
 
 0.472
CCH79_00006495
Uncharacterized protein.
    
 
 0.466
CCH79_00004366
YTH domain-containing protein.
    
 
 0.466
ENSGAFP00000009587
YTH N(6)-methyladenosine RNA binding protein 3.
    
 
 0.466
Your Current Organism:
Gambusia affinis
NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.