CCH79_00013585 protein (Gambusia affinis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CCH79_00013585

Uncharacterized protein. (1272 aa)

Predicted Functional Partners:

CCH79_00012512

0.945

CCH79_00016538

0.944

CCH79_00003403

0.944

ENSGAFP00000017927

0.941

CCH79_00006043

0.940

CCH79_00001612

0.937

CCH79_00016361

0.928

CCH79_00014529

0.911

CCH79_00000142

0.723

ENSGAFP00000023260

0.723

Your Current Organism:

Gambusia affinis

NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCH79_00000142	CCH79_00001612	ENSGAFP00000010627	ENSGAFP00000013243	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	Mitogen-activated protein kinase.	0.490
CCH79_00000142	CCH79_00006043	ENSGAFP00000010627	ENSGAFP00000012460	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	Mitogen-activated protein kinase.	0.490
CCH79_00000142	CCH79_00012512	ENSGAFP00000010627	ENSGAFP00000015264	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	Protein kinase domain-containing protein.	0.476
CCH79_00000142	CCH79_00013585	ENSGAFP00000010627	ENSGAFP00000007390	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.723
CCH79_00000142	CCH79_00016361	ENSGAFP00000010627	ENSGAFP00000011809	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	Mitogen-activated protein kinase.	0.490
CCH79_00000142	ENSGAFP00000017927	ENSGAFP00000010627	ENSGAFP00000017927	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	Mitogen-activated protein kinase 10.	0.490
CCH79_00001612	CCH79_00000142	ENSGAFP00000013243	ENSGAFP00000010627	Mitogen-activated protein kinase.	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	0.490
CCH79_00001612	CCH79_00003403	ENSGAFP00000013243	ENSGAFP00000021667	Mitogen-activated protein kinase.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.978
CCH79_00001612	CCH79_00006043	ENSGAFP00000013243	ENSGAFP00000012460	Mitogen-activated protein kinase.	Mitogen-activated protein kinase.	0.986
CCH79_00001612	CCH79_00012512	ENSGAFP00000013243	ENSGAFP00000015264	Mitogen-activated protein kinase.	Protein kinase domain-containing protein.	0.977
CCH79_00001612	CCH79_00013585	ENSGAFP00000013243	ENSGAFP00000007390	Mitogen-activated protein kinase.	Uncharacterized protein.	0.937
CCH79_00001612	CCH79_00014529	ENSGAFP00000013243	ENSGAFP00000004945	Mitogen-activated protein kinase.	Protein kinase domain-containing protein.	0.616
CCH79_00001612	CCH79_00016538	ENSGAFP00000013243	ENSGAFP00000008219	Mitogen-activated protein kinase.	Protein kinase domain-containing protein.	0.978
CCH79_00001612	ENSGAFP00000017927	ENSGAFP00000013243	ENSGAFP00000017927	Mitogen-activated protein kinase.	Mitogen-activated protein kinase 10.	0.888
CCH79_00001612	ENSGAFP00000023260	ENSGAFP00000013243	ENSGAFP00000023260	Mitogen-activated protein kinase.	ADP-ribosylation factor 6b.	0.490
CCH79_00003403	CCH79_00001612	ENSGAFP00000021667	ENSGAFP00000013243	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Mitogen-activated protein kinase.	0.978
CCH79_00003403	CCH79_00006043	ENSGAFP00000021667	ENSGAFP00000012460	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Mitogen-activated protein kinase.	0.993
CCH79_00003403	CCH79_00012512	ENSGAFP00000021667	ENSGAFP00000015264	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Protein kinase domain-containing protein.	0.935
CCH79_00003403	CCH79_00013585	ENSGAFP00000021667	ENSGAFP00000007390	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.944
CCH79_00003403	CCH79_00014529	ENSGAFP00000021667	ENSGAFP00000004945	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Protein kinase domain-containing protein.	0.702