STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH79_00013964Uncharacterized protein. (333 aa)    
Predicted Functional Partners:
CCH79_00011564
Uncharacterized protein.
    
 
 0.849
CCH79_00006791
Uncharacterized protein.
    
 
 0.828
CCH79_00004815
Uncharacterized protein.
    
 
 0.759
ENSGAFP00000030172
Ribonucleic acid export 1.
   
    0.737
CCH79_00018838
DNA ligase.
   
 
 0.719
ENSGAFP00000031142
Poly (ADP-ribose) polymerase 2.
   
 
 0.699
ENSGAFP00000006404
Eukaryotic translation initiation factor 2B, subunit 1 alpha.
   
    0.698
CCH79_00011933
DNA ligase.
   
 
 0.694
CCH79_00000359
Poly [ADP-ribose] polymerase.
   
 
 0.665
CCH79_00009728
DNA ligase.
   
 
 0.658
Your Current Organism:
Gambusia affinis
NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.