ENSGAFP00000007552 protein (Gambusia affinis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSGAFP00000007552

annotation not available (399 aa)

Predicted Functional Partners:

ENSGAFP00000007526

0.914

ENSGAFP00000007536

0.882

CCH79_00003734

0.869

ENSGAFP00000008761

0.855

CCH79_00015169

0.803

ENSGAFP00000027049

0.799

ENSGAFP00000026568

0.792

CCH79_00007608

0.748

ENSGAFP00000026559

0.746

ENSGAFP00000019845

0.729

Your Current Organism:

Gambusia affinis

NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCH79_00003734	CCH79_00007608	ENSGAFP00000013468	ENSGAFP00000007493	Uncharacterized protein.	Uncharacterized protein.	0.899
CCH79_00003734	CCH79_00015169	ENSGAFP00000013468	ENSGAFP00000011894	Uncharacterized protein.	Uncharacterized protein.	0.779
CCH79_00003734	ENSGAFP00000007526	ENSGAFP00000013468	ENSGAFP00000007526	Uncharacterized protein.	annotation not available	0.923
CCH79_00003734	ENSGAFP00000007536	ENSGAFP00000013468	ENSGAFP00000007536	Uncharacterized protein.	annotation not available	0.916
CCH79_00003734	ENSGAFP00000007552	ENSGAFP00000013468	ENSGAFP00000007552	Uncharacterized protein.	annotation not available	0.869
CCH79_00003734	ENSGAFP00000019845	ENSGAFP00000013468	ENSGAFP00000019845	Uncharacterized protein.	Dynactin 2 (p50).	0.793
CCH79_00003734	ENSGAFP00000026559	ENSGAFP00000013468	ENSGAFP00000026559	Uncharacterized protein.	annotation not available	0.906
CCH79_00003734	ENSGAFP00000026568	ENSGAFP00000013468	ENSGAFP00000026568	Uncharacterized protein.	annotation not available	0.902
CCH79_00003734	ENSGAFP00000027049	ENSGAFP00000013468	ENSGAFP00000027049	Uncharacterized protein.	annotation not available	0.922
CCH79_00007608	CCH79_00003734	ENSGAFP00000007493	ENSGAFP00000013468	Uncharacterized protein.	Uncharacterized protein.	0.899
CCH79_00007608	CCH79_00015169	ENSGAFP00000007493	ENSGAFP00000011894	Uncharacterized protein.	Uncharacterized protein.	0.899
CCH79_00007608	ENSGAFP00000007526	ENSGAFP00000007493	ENSGAFP00000007526	Uncharacterized protein.	annotation not available	0.949
CCH79_00007608	ENSGAFP00000007536	ENSGAFP00000007493	ENSGAFP00000007536	Uncharacterized protein.	annotation not available	0.947
CCH79_00007608	ENSGAFP00000007552	ENSGAFP00000007493	ENSGAFP00000007552	Uncharacterized protein.	annotation not available	0.748
CCH79_00007608	ENSGAFP00000008761	ENSGAFP00000007493	ENSGAFP00000008761	Uncharacterized protein.	annotation not available	0.937
CCH79_00007608	ENSGAFP00000019845	ENSGAFP00000007493	ENSGAFP00000019845	Uncharacterized protein.	Dynactin 2 (p50).	0.793
CCH79_00007608	ENSGAFP00000026559	ENSGAFP00000007493	ENSGAFP00000026559	Uncharacterized protein.	annotation not available	0.928
CCH79_00007608	ENSGAFP00000027049	ENSGAFP00000007493	ENSGAFP00000027049	Uncharacterized protein.	annotation not available	0.925
CCH79_00015169	CCH79_00003734	ENSGAFP00000011894	ENSGAFP00000013468	Uncharacterized protein.	Uncharacterized protein.	0.779
CCH79_00015169	CCH79_00007608	ENSGAFP00000011894	ENSGAFP00000007493	Uncharacterized protein.	Uncharacterized protein.	0.899